Pseudorhizobium flavum: RFYW14_01455
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Entry
RFYW14_01455 CDS
T07144
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
rfv
Pseudorhizobium flavum
Pathway
rfv03030
DNA replication
rfv03430
Mismatch repair
rfv03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rfv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RFYW14_01455
03430 Mismatch repair
RFYW14_01455
03440 Homologous recombination
RFYW14_01455
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rfv03032
]
RFYW14_01455
03400 DNA repair and recombination proteins [BR:
rfv03400
]
RFYW14_01455
Enzymes [BR:
rfv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
RFYW14_01455
DNA replication proteins [BR:
rfv03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
RFYW14_01455
DNA repair and recombination proteins [BR:
rfv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
RFYW14_01455
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DUF655
HROB
Motif
Other DBs
NCBI-ProteinID:
CAD6603736
LinkDB
All DBs
Position
1:1446893..1450381
Genome browser
AA seq
1162 aa
AA seq
DB search
MAEQMETTGATNGEPSPRFVHLRVHSAYSLLEGALPLKKILAKAVADGQPAIAVTDTNNL
FVALEFAQKAIGDGLQPIIGCQVSIDMEDQAEDRRSNQMTKLPAIVLLASTADGYERLVD
LVSRAYLGGEGHASTHIRRSWLEDTGTEGLIALTGASGGPVDVTLREGNSSQARSRLLSL
RDAFGDRLYVELQRHGAYDRRHEHKIISLAYEFDLPLVATNEAFFPSRDDYDAHDALMAV
AHNAIVSDDSRFRLTPDHYLKSRAEMAALFADLPEALDNTIEIARRCSFILDTRKPILPR
FTGATADPEEAERAEAEELRRQSVEGLERRMAALGLSPGYTEQDYRERLDFELSVIERMK
FPGYFLIVSDFIKWAKQNNIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPER
VSMPDFDIDFCQDRREEVIRYVQQKYGREQVAQIITFGSLQARAALRDVGRVLEMPYGQV
DRICKLVPNNPANPTPLSKAIEEEPKLQEEAEKEPVVARLLDIAQKIEGLYRHASTHAAG
IVIGDRPLSKLVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLKTAVDYVSK
RGIHVDLASIPLDDEKTYEMLSRGETIGVFQVESAGMRKALIGMRPDCIEDIIALVALYR
PGPMENIPVYNARKHGEEEIESIHPKIDYLLKETQGVIVYQEQVMQIAQVLSGYSLGEAD
LLRRAMGKKIKEEMDKQRARFVDGAMKNGVSKPQADLIFDLLAKFANYGFNKSHAAAYAI
VSYQTAFMKAHYPAEFLAASMTFDMANTEKLNDFRQDAARLGITVVPPSVQTSFRRFETD
DNRIFYALAAIKGVGEAAVDHIVEVRGDKPFASIEDFCLRIDPKQINRRVLESLICAGAF
DCFGRDRAEMIAGLDRIIGYAQRAQENKTSGQSDMFGSSSAAGPETLIFPPFSPWVPSEK
LMREYQVLGFYLSAHPLDSYGDVLAKMRVQNFAEFSAAVKKGATAGRLAGTVTGRQERKT
RTGNKMGIVTFSDASGQFEAVLFSEALAQYRDLLEPGKSLVITVQADERPEGIGLRIQTA
ASLEEQSVRMQKALRVYVRDSGPLKTVTRHLNARGDGLVSFIVIKDDGQREIEVELAEKF
RISPEIAAALRAAPGVLEVELV
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
atggccgagcagatggaaaccactggtgcaacgaacggagagccttcgcctcggttcgtt
catctgcgggttcattccgcctattcgctgctcgaaggcgcattgccgctcaagaagatc
cttgcgaaggctgtggccgatggtcagccggcgatagccgtcacggacaccaacaacctc
ttcgtcgcactggaattcgcgcagaaggccatcggtgacggtcttcagccaatcatcggg
tgccaggtctccatcgacatggaggatcaggccgaggatcgtcgtagcaaccagatgacg
aagctgccggcgatcgtgcttctggcatctacggctgacggctacgagcggctggtggac
ctcgtcagtcgcgcctatctcgggggcgagggccatgccagcacgcatatccgccgctcc
tggctcgaggacacggggacggagggactgatcgcgttgaccggggcgtccggcggtccc
gtcgacgtcacgctgcgcgaaggcaattccagtcaggcgagatctcggctcctcagcctc
agggacgcgttcggtgaccggctctatgtggaactgcagcgccacggcgcctatgaccgt
cgccacgagcacaagatcatcagccttgcctacgagttcgatctgccactggtcgccacc
aacgaagccttcttcccgtcgcgcgacgattatgatgcccacgacgctctgatggcggtg
gcccacaatgcgatcgtgtccgacgacagccgcttccggctgacccctgaccactatctg
aagagccgtgccgagatggcggcactcttcgccgatctgccggaagcgctggacaacacg
atagagatcgcccggcgctgttctttcatcctcgatacccgcaagccgatcctgccacgc
ttcacgggtgcgacggctgatccggaggaagccgaacgggccgaggcagaggaactgcga
cggcaatcggtggagggcctcgaacggcgaatggcggcgctcggcctcagccccggctat
acggagcaggactaccgcgagcgcctggacttcgagctgagcgtcatcgagaggatgaag
ttcccgggctacttcctgatcgtctcggacttcatcaagtgggcgaagcagaacaacatt
cccgtcggcccgggccgtggatcgggcgccggttcgctggtcgcctatgcgctgacaatt
acggacgtcgatccgctgcgcttctcgctactgttcgagcgcttcctcaacccggaacgc
gtctcgatgcccgacttcgacatcgacttctgccaggaccggcgcgaagaggtgatccgc
tacgtccagcagaaatacggccgtgagcaggtggcccagatcattacattcggatcgctg
caggcccgcgcggcgctgcgcgacgtcggccgggtgctcgaaatgccctacggccaggtc
gacaggatctgcaagctggtgccgaacaatccagccaatccgacgccgctctccaaggcg
atcgaggaggagcccaagctgcaggaagaggcggagaaggagcccgtggttgcacgcctt
ctcgacatcgcccagaagatcgagggactttatcggcacgcctcgacgcacgccgccggc
atcgtgatcggggatcggccgctctccaagctcgtgccgatgtaccgcgatccgcgctcc
gatatgccggttacccagttcaacatgaaatgggtcgaacaggcgggcctggtgaagttc
gacttcctcgggctgaagacgctgaccgtgttgaaaactgcggtcgactacgtctccaaa
cgcggcatccacgtggacctcgcctcgataccgctggacgacgagaagacctacgaaatg
ctctcccgcggcgagacgatcggcgtgttccaggtggaaagtgccggcatgcgcaaggcg
ctgatcggcatgcggccggactgcatcgaggacatcatcgcgctcgttgcactctatcgc
cccggcccgatggagaacattccggtctacaatgcccgcaagcacggcgaggaggagatc
gagtcgatccatccgaagatcgactatctcctgaaggaaacccagggcgttatcgtctac
caggaacaggtgatgcagatcgcccaggttctgtcgggttactcgctcggtgaagccgat
cttctgcgccgcgccatgggcaaaaagatcaaggaggagatggacaagcagcgtgcacgt
ttcgtcgatggtgccatgaagaatggcgtgtcgaagccgcaggctgacttgatcttcgac
ctgctcgccaagttcgccaactacggcttcaacaagtcgcacgccgccgcctacgccatc
gtctcctaccagacggccttcatgaaggcgcactatcccgccgagtttctggccgcgtcg
atgaccttcgatatggcgaacaccgaaaagctgaacgacttccggcaggatgcagcccgc
ctcggcattacggtcgtgccgccatcggtgcagacctcgttccgccgtttcgagaccgac
gacaacaggatcttctacgccctggcggccatcaagggtgtcggcgaggccgcggtcgat
cacatcgtcgaggttaggggcgacaagcctttcgcctcgatcgaggacttctgcctacgg
atcgacccgaagcagatcaaccgccgcgtgctggaaagcctcatttgcgccggcgccttc
gattgcttcgggcgggatcgggcggagatgattgctggcctcgaccgcatcatcggctat
gcgcaacgtgcgcaggaaaacaagacgagcggccagtctgacatgttcggatcatcctcc
gcagcaggtcctgaaaccttgattttcccgcctttctcgccctgggttccttcggagaag
ctgatgcgggagtaccaggttctcggcttctacctgtccgcccacccgctcgattcctat
ggcgatgtactggcgaagatgcgcgtccagaactttgcggaattctccgccgccgtgaaa
aagggcgcgactgccgggcggcttgccgggactgtgaccggacgccaggagcgcaagacc
cgtaccggcaacaagatggggatcgtcaccttttccgacgcctcgggtcagttcgaggcc
gtgctcttctccgaggcgctggcgcagtaccgcgaccttctggagcccggcaaatccctg
gtgatcaccgtgcaggccgacgagcgtccggagggcatcggtttgcgtatccagaccgcc
gcttcgcttgaggagcaatcggtgcgaatgcagaaggcgctgcgcgtctatgtgagggat
tcaggtcccctgaagacggtgacgcgtcacctcaatgcaagaggggacgggttggtctcc
ttcatcgtcatcaaggacgatggtcagcgtgagatcgaggtggagctcgcggagaagttc
cggatttcgccggagattgccgccgcccttagggcggcgccgggagtcttggaggtcgaa
ctcgtatag
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