Rhizobium grahamii: FZ934_09990
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Entry
FZ934_09990 CDS
T06285
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
rgr
Rhizobium grahamii
Pathway
rgr02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
rgr00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
FZ934_09990 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rgr03021
]
FZ934_09990 (rpoD)
Transcription machinery [BR:
rgr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
FZ934_09990 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
DUF5856
Relaxase_C
Phage_DsbA
Imm3
DUF3106
Motif
Other DBs
NCBI-ProteinID:
QFY60722
UniProt:
A0A5Q0C5F4
LinkDB
All DBs
Position
complement(2034706..2036760)
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AA seq
684 aa
AA seq
DB search
MATKVKENEEAEVERDGGTDGPLLDLSDDAVKKMIKAAKKRGYVTMDELNAVLPSEEVTS
EQIEDTMAMLSDMGINVIEDEEAEEAGASGGDDDDSGSDDENEGGELAPSSGTALATAKK
KEPTDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRETMIGGLCESPLTFQAIIIW
RDELNEGTTLLREIIDLETTYSGPEAKAAPQFQSPEKIEADRKAAEEKEKTRRTRSGDDD
ITNVGGEGLPPEEEEEDEDESNLSLAAMEAELRPQVMETLDIIAETYKKLRKLQDQQVEQ
RLAATGTLSSAQERRYKELKDELIKAVKSLSLNQNRVDALVEQLYDISKRLMQNEGRLLR
LAESYGVKRDSFLEQYQGAELDPNWMKSIGNLAARGWKEFAKSENTTIRDIRQEIQNLAT
ETGISIAEFRRIVSMVQKGEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGN
IGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKIVRTSRQ
MLHEIGREPTPEELAEKLAMPLEKVRKVLKIAKEPISLETPVGDEEDSHLGDFIEDKNAL
LPIDAAIQANLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQ
IEAKALRKLKHPSRSRKLRSFLDS
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atggcaaccaaggtcaaagagaacgaagaagcggaagtcgaacgcgacggcggcaccgac
ggccctcttctcgatctttccgatgacgcggtcaagaagatgatcaaggccgcgaagaag
cgcggctatgtgacgatggacgagctgaacgccgtcctgccgtccgaagaagtgacgtcc
gagcagatcgaagatacgatggcaatgctgtccgacatgggcatcaacgtcatcgaggac
gaggaagccgaagaggccggcgccagcggcggcgatgacgacgattctggctccgacgac
gagaacgaaggcggcgaactggcaccttccagcggcaccgcacttgcgaccgcgaagaag
aaggaaccgaccgaccgtaccgacgacccggttcgcatgtatctgcgcgaaatgggttcg
gtcgagcttctgtcgcgcgaaggcgaaatcgccatcgcgaagcgcatcgaggctggccgt
gagaccatgatcggtggtctctgcgagagcccgctgaccttccaggcgatcatcatctgg
cgcgacgaactcaacgaaggcacgacgctgctgcgcgagatcatcgatctcgaaacgacc
tattccggtccggaagccaaggctgcaccgcagttccagagccccgagaagatcgaggcc
gaccgcaaggctgccgaggaaaaggaaaagacgcgccgcacccgttccggcgacgacgac
atcaccaatgtcggcggcgagggcctgcctccggaagaagaggaagaggacgaggacgaa
tccaacctgtcgcttgccgccatggaagcggaattgcgtccgcaggtcatggaaacgctc
gacatcatcgccgagacctacaagaagctgcgcaagctgcaggatcagcaggtcgagcag
cgcctggccgctaccggcacgctgtcatcagcccaggagcgccgctacaaggaactcaag
gatgagctcatcaaggccgtcaagtctctgtcgctgaaccagaaccgcgtcgacgccctc
gtcgagcagctctacgacatttccaagcgactgatgcagaacgaaggccgcctgctgcgc
ctggccgaatcctacggcgtcaagcgtgacagcttcctcgagcagtatcagggtgccgag
ctcgatccgaactggatgaagtcgatcggtaatctggccgcgcgcggctggaaggaattc
gccaagagcgaaaacaccacgatccgcgacatccgccaggagatccagaacctcgcaacg
gaaaccggcatctcgatcgccgaattccgccgcatcgtgtcgatggtgcagaagggcgag
cgcgaagcgcgtatcgccaagaaggaaatggtcgaagcgaaccttcgcctcgtcatctcc
atcgccaagaagtacacgaaccgcggcctgcagttcctcgacctcattcaggaaggcaac
atcggcctgatgaaggcggtcgacaagttcgagtaccgccgtggctacaagttctcgacc
tatgcgacgtggtggatccgtcaggcgatcacccgctcgatcgccgaccaggctcgcacg
atccgtattccggtgcacatgatcgaaacgatcaataagatcgttcgtacctcgcgccag
atgctgcacgagatcggccgcgagccgacgccggaagaactggccgaaaagctcgccatg
ccgctcgaaaaggtccgcaaggtcctgaagatcgccaaggagccgatctcgctcgaaacg
cctgttggtgacgaagaagattcgcacctcggcgatttcatcgaggacaagaacgcgctt
ctgccgatcgacgccgccatccaggcgaacctgcgcgaaacgacgacgcgtgttctggca
tcgctcacgccgcgcgaggagcgcgtgctgcgcatgcgcttcggcatcggcatgaacact
gaccacacgcttgaggaagtcggccagcagttctcggttacccgcgaacgtatccgtcag
atcgaagcgaaggcgctgcgcaagctgaagcatccgagccgctccaggaagctccggagc
ttcctggacagctaa
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