Ruminococcus gauvreauii: NQ502_08535
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Entry
NQ502_08535 CDS
T08490
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
rgv
Ruminococcus gauvreauii
Pathway
rgv03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rgv00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NQ502_08535
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rgv03021
]
NQ502_08535
03400 DNA repair and recombination proteins [BR:
rgv03400
]
NQ502_08535
Enzymes [BR:
rgv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NQ502_08535
Transcription machinery [BR:
rgv03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NQ502_08535
DNA repair and recombination proteins [BR:
rgv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NQ502_08535
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
LCD1
Motif
Other DBs
NCBI-ProteinID:
UWP61062
UniProt:
A0ABY5VL80
LinkDB
All DBs
Position
complement(1763329..1767165)
Genome browser
AA seq
1278 aa
AA seq
DB search
MEKNRIRPITTGKSMRMSYQRQKEVLEMPNLIEVQKDSYNWFLKEGLKEVFNDISPITDY
SDKLSLEFVDFTLCEDDVKYSIEECKERDATYAAPLKVKVRLYNKENDEINEHEIFMGDL
PLMTQTGTFVINGAERVIVSQLVRSPGIYYAIAHDKVGKTLYSSTVIPNRGAWLEYETDS
NDIFYVRVDRTRKVPITVLIRALGVSTNAEIIELFGEEPKILASFTKDTSENYQEGLLEL
YKKIRPGEPLAVESAESLIMSMFFDPRRYDLAKVGRYKFNKKLMLKNRIAGHILAEDVID
TMTGEIIAEKGTEVTREMADSIQNAAVPFVWIQTEERNVKVLSSMMVDITNFVDVDPREV
GVTELVYYPVLSRILEENDSLDDIKEAIKREIHDLIPKHITKEDILASINYNIHLEYGLG
NDDDIDHLGNRRIRAVGELLQNQYRIGLSRLERVVRERMTTQDIEGISPQSLINIKPVTA
AVKEFFGSSQLSQFMDQNNPLGELTHKRRLSALGPGGLSRDRAGFEVRDVHYSHYGRMCP
IETPEGPNIGLINSLASYARINEYGFVEAPYRKIDKTDPKNPRVTDEVIYMTADEEDDFH
VAQANEPLDENGYFVHKNVSGRYRDETQEYEKQMFDYMDVSPKMVFSVATALIPFLQNDD
ANRALMGSNMQRQAVPLMITEAPVVGTGMETKTAVDSGVCMTAKRAGTILRSTSKEIVIR
YDDDASTETYHLTKFLRSNQSNCYNQKPIVFKGDHVEAGQVVADGPSTSQGELALGKNPL
IGFMTWEGYNYEDAVLLSERLVQEDVYTSIHIEEYEAESRDTKLGPEEITRDVPGVGDDA
LKDLDERGIIRIGAEVRAGDILVGKVTPKGETELTAEERLLRAIFGEKAREVRDTSLKVP
HGEYGIVVDAKVFTRENGDELSPGVNQAVRIYIAQKRKISVGDKMAGRHGNKGVVSRVLP
VEDMPFLPNGRPLDIVLNPLGVPSRMNIGQVLEIHLSLAAKALGFNIATPVFDGANEDDI
MDTLDLANDYVNLSWEEFSEKHKDELLPEVYEYLDENREHRELWKGVPISRDGKVRLRDG
RTGEYFDSPVTIGHMHYLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEV
WALEAYGASYTLQEILTVKSDDVIGRVKTYEAIIKGDNIPEPGIPESFKVLLKELQSLGL
DVKVLKEDQTEVEIMETVDYGETDLRSIIEGDKGYSSDESYGEYGFSKQEFAGEELIDVE
EPEEEEEMIDLEETLDEE
NT seq
3837 nt
NT seq
+upstream
nt +downstream
nt
atggagaaaaacagaatacgtccaattacgaccgggaaaagtatgcggatgagttaccag
agacaaaaggaagttctggaaatgcccaacctgatcgaggttcagaaagattcatataat
tggttcctgaaagaagggttaaaggaagtttttaatgatatctctccgattaccgactac
agcgacaagttgagcctggagtttgttgattttacattgtgcgaagatgatgtcaaatat
tccatcgaagaatgcaaagaaagagatgctacttacgccgcacctttaaaagtaaaagtt
cgcttatataataaagaaaatgacgagattaatgaacacgagatattcatgggcgatctg
cctttgatgacgcagacaggtacttttgttatcaatggtgctgaacgtgttatcgtcagc
cagttagtacgttcccctggtatttactatgccatcgcacatgataaagttggtaagaca
ctgtattcatccaccgttatcccgaacaggggcgcgtggcttgagtatgagacggattcc
aacgatattttttatgtacgtgtagacaggaccagaaaggttccgatcacagtactgatc
cgtgcccttggagtgagcactaatgccgagatcatagaattatttggtgaagagccgaag
attctggcaagttttacaaaggacacctccgaaaactatcaggagggtctgctcgaatta
tataaaaagatccgaccgggtgaaccgctcgcagtagagagtgcggagagcctgatcatg
agtatgttcttcgatcccagaagatatgatctggcgaaagttggacgttataaatttaat
aaaaaactgatgcttaaaaaccgtattgccggacatatccttgctgaggatgtcatcgat
acgatgacaggcgaaattatcgcggaaaaaggcacagaagttacgagggaaatggcggat
tccatccagaatgcagccgttccttttgtgtggattcagacagaagagcgtaatgtcaaa
gtactgtcaagcatgatggtagatattacgaactttgtcgatgtcgatccccgggaagta
ggggttaccgaactcgtgtattatccggtactgtcgcgaattctggaggagaatgacagt
ctcgacgatatcaaagaggccattaagagagagattcatgatcttattccgaagcatata
acaaaggaagatattcttgcttctattaactataatattcatctggaatacggtcttggt
aatgacgatgacatcgaccatcttggaaacagaagaatccgtgcggttggtgaactgctc
caaaaccagtacagaatcggtctgtccagactggagagagtggtccgcgaaagaatgact
acacaggacatcgaggggatttccccgcaatccctgatcaatatcaaaccggttacagca
gcggtgaaagaatttttcggatcttcacagctgtcgcagttcatggatcagaacaaccct
ctgggagagctgacgcataagaggcgtttgtctgcactgggtcccggcggtctgtcgcga
gacagggcaggattcgaggttcgagacgttcactactcccattacggaagaatgtgtccg
atcgagacgccggaaggtccgaatatcggtctgatcaattcactggcatcttatgcccgt
attaatgaatacggttttgttgaggcgccatacagaaagatcgataaaacagatcccaaa
aatccgcgtgtcacagatgaagttatctatatgacagcggatgaagaagatgatttccac
gttgctcaggcgaatgagccgctcgatgagaatggatattttgttcataagaatgtatcc
ggccgttacagagatgagactcaggagtatgaaaagcagatgtttgattacatggacgta
tctcctaagatggtattctccgtggcaacagctctgattccgtttctgcagaatgatgat
gccaaccgcgcgctgatgggatccaacatgcagcgccaggcggtaccgctgatgatcacg
gaagcccctgtggttggaaccggtatggagaccaagacggcagttgactccggtgtctgc
atgacggccaagagagcggggacgatcctgcgctcaacatccaaggagattgtgatccgc
tacgacgacgatgccagcacagagacgtatcatctgacgaaattcttacgaagtaatcag
agcaactgttataaccagaaaccgatcgtgtttaaaggagatcatgtagaggctggtcag
gttgtcgcagacggcccgtccacttcccagggggaactggcactcggcaagaacccgctg
attggttttatgacatgggaaggctataactacgaggacgctgtactgctcagcgagaga
ctcgtacaggaagatgtctacacatccattcatatagaagaatacgaagcagaatccagg
gataccaagctgggaccggaagagatcacgagggatgttccgggtgtcggcgatgatgcg
ctgaaagatctggatgaacgcgggattattcgtattggtgcggaagtccgtgccggtgat
attctggttggtaaggtgactcccaagggagagactgaactgacagcagaggagcgtctg
ctgcgtgcgattttcggtgagaaggcgcgcgaggtgcgtgatacctccctgaaggttccc
catggggaatacggtatcgttgtggatgccaaagtgtttacaagagaaaacggggatgag
ctctctcctggtgtgaatcaggctgttcgcatttatatcgcgcagaagagaaagatttcc
gttggtgataaaatggccggacgtcacggtaacaagggtgttgtttcccgtgtacttccg
gtggaagatatgccgtttctgccaaacggacgcccgctggatatcgtactgaatccgctg
ggtgtaccatcacgtatgaatatcgggcaggtgctggagattcatctgagtcttgcggcc
aaagccctgggattcaacattgcaactccggtatttgacggagcaaacgaagacgacatc
atggatacgctggatctggcgaatgattatgtgaatctgagctgggaagagttctccgaa
aagcacaaagatgagctgcttccggaggtttatgagtatctggatgagaacagagaacac
agagaactgtggaagggtgttccgatttccagagacggaaaagtcagacttcgtgatgga
aggaccggtgaatattttgacagtccggtaacgatcggacacatgcattatctgaagctt
catcacctggtagatgacaagattcatgcacgttccacgggaccatactcgcttgttacg
cagcagccgctgggtggaaaagctcagttcggcggacagcgtttcggtgagatggaggtt
tgggccctggaagcatacggtgcatcatatacactgcaggagattctgacagtgaagtcg
gatgatgtcatcggacgtgtgaagacgtatgaggcgatcattaaaggtgataacattcct
gaaccgggaattccggaatcatttaaggttctgctcaaagagctgcagtccctgggactg
gatgtcaaagtgctcaaggaagatcagacggaagtcgaaatcatggagaccgtcgattac
ggtgagactgacctgcgttctattatcgaaggagacaaaggatattcatccgatgaatct
tacggggaatatggattttccaaacaggaattcgcaggggaagagttgatcgatgtggag
gaacctgaggaagaagaggaaatgattgacctggaagaaactcttgacgaagagtag
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integrated database retrieval system
