Rhodovulum sp. P5: RGUI_2938
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Entry
RGUI_2938 CDS
T04813
Name
(GenBank) DNA-directed RNA polymerase beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
rhc
Rhodovulum sp. P5
Pathway
rhc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rhc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
RGUI_2938
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rhc03021
]
RGUI_2938
03400 DNA repair and recombination proteins [BR:
rhc03400
]
RGUI_2938
Enzymes [BR:
rhc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
RGUI_2938
Transcription machinery [BR:
rhc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
RGUI_2938
DNA repair and recombination proteins [BR:
rhc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
RGUI_2938
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
DOCK-C2
Motif
Other DBs
NCBI-ProteinID:
ARE41079
UniProt:
A0A1V0PY59
LinkDB
All DBs
Position
2851126..2855262
Genome browser
AA seq
1378 aa
AA seq
DB search
MAQTHIGQKRIRRYYGKIREVLDMPNLIEVQKSSYDLFLNSGDGPAPADGEGIQGVFQSV
FPIKDFNETAVLEFVRYELERPKYDVEECQQRDMTYSAPLKVTLRLIVFDVDEDTGAKSV
KDIKEQDVFMGDMPLMTQNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFAC
RIIPYRGSWLDFEFDAKDIVFARIDRRRKLPVTTLLYSLGLDQEGIMDAYYETVEFKLEK
NRGWVTRFFPERVRGTRPTYDLVDAGTGEVICKAGDKVTPRQVKKLIEEGNVTELLVPFD
HIVGRYVAKDIINEETGAIYVEAGDELTWDVDKDGEVTGGTLKDLLDAGVTEIPVLDIDN
INVGPYIRNTMAQDKNMSRETALMDIYRVMRPGEPPTVEAATALFDSLFFDSERYDLSAV
GRVKMNMRLALDAPDTQRTLRKEDIISCIKALVELRDGKGEVDDIDHLGNRRVRSVGELM
ENQYRVGLLRMERAIKERMSSVEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNP
LSEVTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRMCPIETPEGPNIGLINSLATFAR
VNKYGFIETPYRMVKDGQVTDEVHYMSATEEMRHTVAQANAHLDAEGRFENELVNTRQAG
EYTMAPRESVDLIDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLLQADAPFV
GTGIERVVAQDSGAAIMAKRGGIIDQVDAQRIVIRATEDLEPGDPGVDIYRLRKFQRSNQ
NTCINQKPLVKVGDTVIKGEVVADGPSTDMGELALGKNVIVAFMPWNGYNYEDSILISER
IARDDVFTSIHIEEFEVAARDTKLGPEEITRDIPNVGEEALRNLDEAGIVYIGAEVGPGD
ILVGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGDFGTVVEVRVFNRHGVDK
DERALQIEREEVERLARDRDDEQAILERNIYARLKSMILGKVAVKGPKGVSPGSTIDEAL
LDGLSKGQWWQLALENEEDAGQVEALNAQFEAQKRALEHRFEDKVEKVRRGDDLPPGVMK
MVKVFIAVKRKLQPGDKMAGRHGNKGVISRVVPMEDMPFLQDGTPVDLVLNPLGVPSRMN
VGQILETHMGWAARGLGLKIDDALGEYKRSGDLTPVREAMRLAYGDEVYESVIAGMDEGQ
VVESASTVTRGVPIATPVFDGAKEPDVNDALIRAGFSQSGQSVVYDGRTGEQFARPVTVG
VKYLLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQ
EMLTVKSDDVAGRTKVYESIVKGEDNFEAGVPESFNVLVKEVRGLGLNMELLDAEEDE
NT seq
4137 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaaacccacattggccagaagcgtatccgcagatattatggcaagatccgcgaa
gtgctggatatgccgaacctcattgaggtccagaaatcttcctatgacctgttcctgaat
tccggcgatggcccggcgcccgcagatggcgaaggcatccagggcgtgttccagtcggtc
ttcccgatcaaggatttcaacgagaccgcggttctggaattcgtccgttacgaactggaa
cggccgaaatacgacgttgaggaatgccagcagcgcgacatgacctattccgcgccgctg
aaggtcacgctgcgcctgatcgtgttcgatgtcgacgaggataccggtgcgaaatcggtg
aaggacatcaaggagcaggacgtgttcatgggcgacatgccgctcatgacgcagaacggc
accttcatcgtcaacgggacggagcgggtgatcgtctcccagatgcaccgctccccgggt
gtgttcttcgaccacgacaagggcaagacgcattcgtcgggcaaactgctgtttgcctgc
cggatcattccctatcgcgggtcgtggctggatttcgagttcgacgccaaggatatcgtc
ttcgcccgcatcgaccggcgccggaaactgccggtgacgacgctgctgtattccctcggt
ctcgatcaggaaggcatcatggatgcctattacgaaacggtcgagttcaagctggaaaag
aaccgcggctgggtcacccggttcttccccgagcgtgtgcgcggcacgcgcccgacctac
gatcttgtcgatgccggcacgggcgaggtgatctgtaaggccggtgacaaggtcacgccg
cggcaggtcaagaagctgatcgaggaaggcaacgtcaccgaattgctggtgccgttcgac
catatcgtcggccgttacgtcgccaaggatatcatcaacgaggaaaccggcgcgatctat
gtcgaggccggggatgaactgacctgggacgtggacaaggatggcgaggtcaccggcggt
acgctgaaggatctgctggatgccggcgtcaccgagatcccagtgctcgacatcgataac
atcaatgtcggcccctacatccgcaacaccatggcgcaggacaagaacatgagtcgggaa
accgcgctcatggacatctaccgcgtcatgcgcccgggcgagccgcccaccgtcgaggcc
gcgaccgcgctgtttgactcgctgttcttcgacagcgagcgctatgacctttccgccgtc
ggccgggtgaagatgaacatgcgacttgccctcgacgcgcccgacacccagcggacgctg
cgcaaggaagacatcatctcctgcatcaaggcgctggtggagctgcgcgacggcaagggt
gaggtcgacgatatcgaccacctcggcaaccgccgggtgcgctcggtcggcgagctgatg
gagaaccagtaccgcgtcggcttgctgcggatggaacgcgcgatcaaggaacgcatgtcg
tcggtcgaaatcgacacggtgatgccgcaggaccttatcaatgcgaaaccggccgcggcc
gcggtgcgcgaattcttcggctcctcacagctgtcgcagttcatggaccagaccaacccg
ctgtcggaagtcacccacaaacgccgtctgtcggcgcttggcccgggcggtctgacgcgg
gagcgtgcgggctttgaagtccgcgacgtgcacccgacgcattacggccgcatgtgcccg
atcgaaacgccggaaggtccgaacatcggcctgatcaactctctggcgacctttgcgcgt
gtcaacaagtacggcttcatcgaaacgccctatcgcatggtcaaggacgggcaggtgacc
gacgaggtccactacatgtctgcgaccgaggaaatgcggcacaccgtggcccaggccaac
gcgcatcttgatgccgagggccggttcgagaacgaactggtgaacacccgccaggcgggt
gaatacaccatggcaccgcgcgaaagcgtggacctgatcgacgtgtcgccgaaacagttg
gtgtcggtcgcggcctcgctgatcccgttccttgaaaatgacgacgccaaccgcgcactt
atgggctcgaacatgcagcggcaggccgtgcctctgctgcaggccgacgcgccgtttgtc
gggaccggcatcgaacgggtcgtcgcgcaggattccggcgccgcgatcatggcgaaacgc
ggcggcatcatcgaccaggtagatgcacagcggatcgtgatccgggcaaccgaggatctg
gaacccggcgatcccggcgtggacatctaccgcctgcggaagttccagcgttccaaccag
aacacctgcatcaaccagaaacctctggtgaaggtgggcgacacggtgatcaagggtgag
gtcgtcgccgacggcccctccacggatatgggtgagcttgcgctcggcaagaacgtgatc
gtcgcgttcatgccgtggaacggctacaactatgaagactcgatcctgatctcggaacgc
atcgcacgcgatgacgtcttcacctcgatccatatcgaggaattcgaggttgcggcccgc
gacaccaagctcgggccggaagagatcacccgcgacatcccgaacgtgggcgaggaagcg
ctgcgcaacctcgacgaggcggggatcgtctatatcggcgccgaagtggggccgggcgac
atccttgtcggcaagatcacccccaagggcgaaagcccgatgacgccggaggagaaactc
ctgcgcgcgatcttcggtgaaaaggcgtcggatgtgcgcgatacctcgctgcggctgccg
ccgggcgatttcggcaccgtcgtcgaggtccgggtgttcaaccgccacggcgtcgacaag
gatgaacgcgccctgcagatcgagcgggaagaggtcgaacgccttgcccgcgaccgggac
gacgaacaggcgatcctggagcgcaacatctatgcccgtctgaagtcgatgatccttggc
aaggttgccgtgaaggggccgaagggcgtgagcccgggctcgaccatcgatgaggccctt
ctggacggcctgtccaagggccagtggtggcagcttgcgctggagaacgaggaagacgcc
ggacaggtcgaggccctgaacgcgcagttcgaggcgcagaagcgtgcgctggaacaccgc
ttcgaggacaaggtcgagaaggtgcgccggggcgacgacctgccgccgggcgtgatgaag
atggtcaaggtcttcatcgcggtcaaacggaagctgcagccgggcgacaagatggccggg
cggcacggcaacaagggtgtgatctcccgcgttgttccgatggaggacatgccgttcctg
caggacggcacgccggtcgatctggtgctgaacccgctgggcgtgccctcgcggatgaac
gtgggccagatcctcgaaacccatatgggctgggccgcgcgtggtctggggctcaagatc
gacgacgcgctgggcgaatacaagcgctccggcgatctgaccccggtgcgcgaggcgatg
cgcctggcctatggtgacgaggtctacgagtccgtcattgccggtatggatgagggtcag
gtggttgaatccgcctcgaccgtgacccgcggtgtgccgatcgcgacccccgttttcgac
ggggcgaaggaaccggacgtgaacgatgcgctgatccgcgcgggcttcagccagtcgggc
cagtccgtcgtgtatgacggccgcacgggcgagcagttcgcgcgccccgtcaccgtcggc
gtcaagtacctgctgaagctgcaccaccttgtggacgacaagatccacgcgcgctcgacc
gggccgtacagtcttgtcacgcagcagccgctgggcggcaaggcccagttcggcggtcag
cgcttcggcgagatggaggtctgggccttggaagcctatggcgccgcctacaccctgcaa
gagatgctgacggtgaagtcggacgacgtggcgggccggaccaaggtgtacgagtcgatc
gtcaagggtgaggacaatttcgaggccggcgtgccggagagcttcaacgttctggtgaag
gaagtccgcggcctcgggctcaacatggaactcctggatgcggaggaagacgaatag
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