Rhodanobacter denitrificans: R2APBS1_0402
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Entry
R2APBS1_0402 CDS
T02495
Name
(GenBank) penicillin-binding protein 6
KO
K07258
serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:
3.4.16.4
]
Organism
rhd
Rhodanobacter denitrificans
Pathway
rhd00550
Peptidoglycan biosynthesis
rhd01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
rhd00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
R2APBS1_0402
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
rhd01002
]
R2APBS1_0402
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
rhd01011
]
R2APBS1_0402
Enzymes [BR:
rhd01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.16 Serine-type carboxypeptidases
3.4.16.4 serine-type D-Ala-D-Ala carboxypeptidase
R2APBS1_0402
Peptidases and inhibitors [BR:
rhd01002
]
Serine peptidases
Family S11: D-Ala-D-Ala carboxypeptidase A family
R2APBS1_0402
Peptidoglycan biosynthesis and degradation proteins [BR:
rhd01011
]
Peptidoglycan biosynthesis and degradation
DD-Carboxypeptidase/DD-Endopeptidase (Low molecular weight PBP)
R2APBS1_0402
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_S11
PBP5_C
Beta-lactamase2
Motif
Other DBs
NCBI-ProteinID:
AGG87573
UniProt:
M4NDP0
LinkDB
All DBs
Position
450850..452100
Genome browser
AA seq
416 aa
AA seq
DB search
MNFFRRTLTPFAAVLLVGVAVAQTPPRPSPVPRPVVPDAPVPPPPDVDGKSWVLMDYATG
QMLASKEPDQRVEPASITKVMTDYVVSAEIANGKIHMTDPVTISENAWRGGGAGTDGSTS
FLKLNSQVPLKDLLYGMIIQSGNDAAIALAEHTAGSEPAFAGLMNAYAKQLGMVNSNFEN
ASGYPIANHYTTAHDIAILSRALIHDFPEDYAISAVKEFEWNGIKQHNRNTLLWRDPSVD
GIKTGHTAAAGYCLAASAKQGDARMIAIVMGASSEKARADSAMALLNYGFRFYETHKLYG
AGKPLATPRLWKGAANQLPLGVADDVLVTVKRGQYDQLKATMDIPATLIAPFSKGQQIGT
LRITLDGQPVQSVPLVALADAPQGGFFSRLWDSILLWFHSDKKVDAQAPAKDAGAK
NT seq
1251 nt
NT seq
+upstream
nt +downstream
nt
atgaattttttccgccgtaccctgaccccgttcgccgccgtcctgctggtcggtgttgcc
gttgcccagacgccgccgcgcccgtcgccggtgccgcgtccggtggtaccggacgcgccg
gtgccgccgccgccggacgtcgacggcaagagctgggtgctgatggattacgccaccggc
cagatgctcgccagcaaggaacccgaccagcgcgtggagccggcctcgatcaccaaggtg
atgaccgactacgtggtctcggccgagatcgccaacggcaagatccacatgaccgacccg
gtcaccatcagcgagaacgcctggcgcggcggcggcgccggcaccgacggctccaccagt
ttcctcaagctcaacagccaggtgccgctgaaggacctgctgtacggcatgatcatccag
tccggcaatgacgcggcgatcgcgctggccgagcacaccgccggctccgagccggcgttt
gccgggctgatgaacgcatacgccaagcagctgggcatggtcaattcgaacttcgagaac
gcctccggctacccgatcgcgaaccactacaccaccgcgcacgacatcgcgatcctgtcg
cgcgcgctgatccacgacttccccgaggactacgcgatctccgcggtcaaggagttcgag
tggaacgggatcaagcagcacaaccgcaacacgctgctgtggcgcgaccccagcgtggac
ggcatcaagaccggccacaccgcggccgccggctactgcctggccgcctcggcgaagcag
ggcgatgcacgcatgatcgcgatcgtgatgggtgccagcagcgagaaggcacgcgccgat
tcggcgatggccctgctcaactacggcttccgcttctacgagacgcacaagctgtacggt
gccggcaagccgctggccacgccgcggttgtggaagggcgcggccaaccagctgccgctg
ggcgtggccgacgacgtgctggtcaccgtcaagcgcggccagtacgaccagctcaaggcg
accatggacattcccgccacgctgatcgcgccgttcagcaagggccagcagatcggcacg
ctgcgcatcacgctggacggccagccggtgcagagcgtgccgctggtggcgctggccgac
gcgccgcagggcggcttcttctcgcgcctgtgggacagcatcctgctgtggttccacagc
gacaagaaggtcgacgcgcaagcaccggccaaggacgcgggtgcgaagtga
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