Rhizobium sp. Pop5: NE852_10680
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Entry
NE852_10680 CDS
T11439
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
rhip Rhizobium sp. Pop5
Pathway
rhip03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rhip00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NE852_10680
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rhip03019
]
NE852_10680
03009 Ribosome biogenesis [BR:
rhip03009
]
NE852_10680
Enzymes [BR:
rhip01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NE852_10680
Messenger RNA biogenesis [BR:
rhip03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NE852_10680
Ribosome biogenesis [BR:
rhip03009
]
Prokaryotic type
rRNA helicases
NE852_10680
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
UVD58611
LinkDB
All DBs
Position
complement(1727263..1729233)
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AA seq
656 aa
AA seq
DB search
MTEFNGVVPAIAKALQKRGYAELTPVQQAMLDPKLAASDALVSAQTGSGKTVAFGLALAP
TLLDGSDRFGTAGAPLALVIAPTRELALQVKRELEWLYEMTGAVIASCVGGMDIRSERRS
LERGAHIVVGTPGRLCDHIRRHALDMSELKAAVLDEADEMLDLGFREDLEFILDSAPDER
RTLMFSATVPAAIAKLAKSYQRDAVRISTQAEEKQHVDIEYRALVVAPADRENAIINVLR
YYEATNAIVFCSTRAAVNHLTARFNNRNFSVVALSGELTQNERSHALQAMRDGRARVCIA
TDVAARGIDLPGLDLVIHADLPTNPETLLHRSGRTGRAGRKGISAMIVPLNARRKAERLL
DNAGISAAWARPPSAEEVNERDDERLLADPIFSEAPQEEEQGLVQQLLSSHGAEKLAAAF
LRLYRTNHSAPEDLIEVTVQDGGSRKRRDNAEPYEPAQKGPREDFGASVWFSVSVGRKQN
AEPRWLIPMLCRNGNVTKREIGAIKMQPEETFVEIAAASAESFLAAIGPNKALERGIRVT
KLSGTPDFSRAPSPKPYAGKPSRDERPGDASRGERPKNKFGKGPGGGYAAADNSGQQRQD
SKPWSKKPGKPGFDGPKSDKPKFDKPKYDKPRFEGGKSEGKGGAGPKNKFSKKKPS
NT seq
1971 nt
NT seq
+upstream
nt +downstream
nt
atgacagaattcaacggcgtcgttccggcgatcgccaaggcgttgcagaagcgcggttac
gccgaactcaccccggtgcagcaggcgatgctcgacccgaagcttgccgcatccgacgcg
ctggtttcggcccagacgggctcaggcaagaccgtcgccttcggactggcgctggcgccg
acgctgctcgacgggagcgatcgtttcggcactgccggagcgccgctcgccctcgtgatc
gccccgacacgcgagcttgccctgcaggtaaagcgcgagctcgaatggctttatgagatg
acgggcgctgtgatcgcgagctgcgtcggcggcatggacatccgtagcgagcgccgctcg
ctcgaacgcggcgcccatatcgtcgtgggcacgcccggccgtctctgcgaccatatccgc
cggcatgcgctcgacatgtccgagctgaaggccgccgtgctcgacgaggccgacgagatg
ctcgatctcggcttccgcgaggacctggaattcatcctcgactcggcgccggacgagcgc
cggacactgatgttttcggcgaccgtacctgccgcgatcgccaagctcgccaagagctat
cagcgcgatgccgtacgcatcagcacgcaggccgaggagaagcagcatgtcgatatcgaa
tatcgcgcgcttgtcgtggctccggccgaccgcgagaacgccatcatcaacgtgctgcgc
tattacgaagcgaccaacgccatcgtcttctgctcgacgcgcgctgccgtcaatcatctg
accgcacgcttcaacaaccgcaatttctccgttgtagctctatctggcgagctgacacag
aacgaacgtagccatgcgctgcaggcgatgcgtgacgggcgtgctcgcgtgtgcatcgca
accgacgtcgccgcccgcggtatcgatctgccgggcctcgatctcgtcatccatgccgac
cttccgaccaatccggagacgctgctacaccgcagcggtcgcactggacgcgcgggacgc
aagggcatcagcgccatgatcgtgccgctgaatgcgcggcgcaaggccgagcgtctgctc
gacaatgccggtatttcggcagcctgggcgcggccgccgtcggccgaggaagtaaacgaa
cgcgacgacgaacggctgctcgccgatccgatcttcagcgaagcgccgcaagaggaagaa
caggggctggtgcagcagctgctttccagccacggcgccgaaaagctcgctgccgccttc
ctgcgcctttaccgcaccaaccattcggcgccggaggatctgatcgaggtcaccgtgcag
gacgggggcagccgcaagcgccgcgacaatgcagagccttacgagccggcgcagaaggga
ccgcgcgaggatttcggcgccagcgtctggttctccgtttcggtcggccgcaagcaaaat
gccgagccgcgctggctgatcccgatgctctgccgcaacggcaatgtcaccaagcgcgag
atcggcgcgatcaagatgcagcccgaggaaacctttgtggagatcgcggcggcgagtgcc
gaaagcttcctggcggcgatcgggccgaacaaggcgctcgaacgcggcattcgcgtgacc
aagctctccggcacgccggatttcagccgcgccccgtcgccgaaaccttatgccggcaag
ccatctcgtgacgagcggccaggcgacgcctcccgtggcgaacgtccaaagaacaagttc
ggcaagggtccgggcggcggatatgctgcagccgacaatagcggccagcaaaggcaggat
agcaagccctggagcaagaaacccggcaagcccggcttcgatggtccgaaatcagataag
ccgaagttcgacaagcctaaatacgacaagccaagattcgaaggcgggaaatccgagggc
aagggtggcgccgggccgaagaacaagttctcgaagaagaagcccagctga
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