Rhodovulum sp. MB263: B5V46_09210
Help
Entry
B5V46_09210 CDS
T04771
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rhm
Rhodovulum sp. MB263
Pathway
rhm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rhm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
B5V46_09210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhm03400
]
B5V46_09210
Enzymes [BR:
rhm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
B5V46_09210
DNA repair and recombination proteins [BR:
rhm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
B5V46_09210
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
AAA_30
UB2H
AAA_16
SecA_DEAD
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ARC88783
UniProt:
A0A1V0HXX4
LinkDB
All DBs
Position
1976137..1979601
Genome browser
AA seq
1154 aa
AA seq
DB search
MEEQRHITAGGAPEGYDARLLARELTRSGRPILHVARDDKRLAAMRAALAFFAPEAVVLD
FPAWDCLPYDRVSPNADVEAARMATLAGLAAGLSGPFILLTTLNAATQRVPARALLQGAS
FTARVGMQIDEAALRAFLVRMGFTQAPTVMEPGDYAIRGGIVDIYPPGEAGPVRLDLFGD
VLDGARRFDPATQRTTEKLKSVELAPVSEVILDEAAITRFRQNYRIEFGAAGTDDPLYEA
VSAGRKHAGVEHWLPFFHDRLETLFDYLPEAAVYLDDQVTPARLARWETIEDQYQNRREA
MAQKGRIDTVYKPCPPGLMYLDDAAWEAALADRRLVQLAPLPQGLGPGVIDAGGRIGRNF
APERKLEQVSLFSALKDHIQARREEGAVVVASYSEGARERLKGLLEDEELTDATLVSDIR
EVTGARGLHLAVWALEHGFEGPGLTVISEQDVLGERLIRGPKKRRRAENFLTETQSLSPG
DLVVHVEHGVGRYMGLETVAVPDPATGKPGAPHEFLLLVYAEDGKLYVPVENIELLSRYG
HDEGLLDRLGGGAWQARKARLKERIREMADKLIRVAAERVLRHAPILEPGHHMWEAFSAR
FPYQETDDQLAAIEDVLTDMASGTPMDRLICGDVGFGKTEVAMRAAFVAAMSGVQVAVVA
PTTLLARQHAKGFAERFRGFPVEVRQLSRFVPAREAAATRAGLAEGTVDICIGTHALLAK
SVKFRNLGLLIIDEEQHFGVAHKERLKQMRSDVHVLTLTATPIPRTLQMSLTGVRDLSII
GTPPVDRLSIRTYVSEFDTVTIREALLREHYRGGQSFFVVPRVRDLPDMEHFLREQVPEV
SFITAHGQLAAGDLDERMNAFYDGKYDVLLATTIVESGLDIPTANTMIVHRADMFGLAQL
YQIRGRVGRSKARAYAYLTTKPRAPLTAQAQKRLRVLGSLDTLGAGFTLASQDLDIRGAG
NLIGEEQSGHVREVGFELYQSMLEEAIAKIRSGELEGMTDTDSDWSPQINLGVPVLIPDD
YVPDLDVRLGLYRRLSTLSTKVELEGFAAELIDRFGKLPKEVNTLLLVVRIKAMCKRAGI
ARLDGGPKGATVQFHNDKFANPAGLVAFIQDQQGLARVKDNKIILRRDWKKDSDKIKGAF
AIARDLADKLRETA
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atggaagagcagcgtcatatcaccgccggcggcgcccccgaagggtacgatgcccggctt
cttgcccgcgagctgacccggagcggccggcccatccttcatgtcgcccgcgacgacaag
cggctggcggcgatgcgcgcggcgctggccttcttcgcgcccgaggcggtcgtgctcgac
tttccggcctgggactgcctgccctatgaccgggtctctcccaatgccgatgtcgaggcg
gcgcggatggcaacgctggcggggctggccgcggggctgtccggcccctttatcctgctg
accacgctgaatgccgcgacccagagggtacccgcacgcgcgctgttgcagggggcctcc
ttcaccgcgcgggtcggcatgcagatcgacgaggcggcgctgagggcctttctcgtccgg
atggggttcacccaggcgccgacggtgatggaacccggcgattacgcgatccggggcggc
atcgtcgatatctatccgccgggcgaggccgggccggtgcggctcgatctcttcggcgat
gtgctcgacggcgcgcgccgcttcgatccggcgacccagcgcaccaccgagaaactgaaa
tcggtcgaactggcgccggtctcggaggtcattctggacgaggccgcgatcacccgcttc
cggcagaattaccggatcgaattcggcgcggcgggcaccgatgacccgctttacgaggcg
gtgagcgcggggcgcaagcatgcgggcgtcgagcactggctgcccttcttccatgaccgg
ctcgagacgcttttcgactatctgccggaggccgcggtctatctcgacgatcaggtgacg
cctgcgcggctggcgcgctgggagaccatcgaggaccagtaccagaaccggcgcgaggcg
atggcgcagaagggccggatcgacacggtctacaagccctgtccgccgggcctgatgtat
cttgacgacgccgcctgggaggctgccctggccgatcgccggctggtgcagctggccccg
ctgccgcagggtctgggcccgggcgtgatcgatgcgggcggccgtatcgggcgcaatttc
gcgcccgagcgcaagctggaacaagtcagtcttttcagcgccttgaaggatcatatccag
gcgcggcgcgaagagggcgcggtcgtggttgcctcctattcagagggcgcgcgcgagcgg
ctgaagggcttgctcgaagacgaggagctgaccgacgcgacgctggtctcggatattcgc
gaggtgaccggggcacgcgggctgcatctggcggtctgggcgctcgaacatggtttcgag
gggccggggctgaccgtcatctcggaacaggacgtgctgggcgagcggctgatccgcggt
ccgaaaaagcgccgccgggccgagaatttcctgaccgagacgcagtcgctctcgcccggc
gatctggtcgtgcatgtcgagcacggggtcggccgctacatggggctcgagaccgtggcg
gtgcccgacccggccaccggcaagcccggcgcgccgcatgaattcctgcttctggtctat
gccgaggatggcaagctttacgtcccggtcgagaatatcgagctgctcagccgctatggc
catgacgaggggctgctcgaccggctgggcggcggcgcctggcaggcgcgcaaggccagg
ctcaaggaacgcatccgcgagatggccgacaagctgatccgggtcgcggccgagcgtgtg
ctgcgccatgccccgatcctggagcccggtcatcacatgtgggaggcgttctctgcgcgc
ttcccctatcaggagaccgacgaccagctggccgcgatcgaggacgtgctgaccgacatg
gcctcgggcacgccgatggaccggctgatctgcggcgatgtgggcttcggcaagaccgag
gtcgcgatgcgcgcggccttcgtcgcggcgatgtcgggcgtgcaggtcgcggtggtggcg
ccgacgacgctgctggcgcgccagcatgccaagggctttgccgagcggttccggggcttc
ccggtcgaggtccggcagctctcgcgcttcgtgcccgccagggaggccgccgcgacacgc
gcggggctggccgagggcacggtcgatatctgcatcggcacccatgcgcttctggccaag
agcgtgaagttccgcaatctgggcctgctgatcatcgacgaggaacagcatttcggcgtc
gcccacaaggagaggctgaagcagatgcgctcggatgtgcatgtgctgaccctgaccgcg
accccgatcccgcgcaccctgcagatgagcctgaccggcgtgcgcgatctctcgatcatc
ggcacgccgcccgtcgaccggctgtcgatccggacctatgtcagcgaattcgataccgtc
accatccgcgaggcgctgctgcgcgaacattatcgcggcgggcagagcttcttcgtggtg
ccccgcgtcagggacctgcccgacatggagcatttcctgcgcgagcaggttcccgaggtc
agcttcatcaccgcccatggccagttggcggcgggcgatctcgacgagcggatgaatgcc
ttctacgacggcaaatatgacgtgctgctggccacgaccatcgtggaatccgggctcgac
atcccgaccgcgaacacgatgatcgtgcaccgcgccgacatgttcgggctggcgcagctg
taccagatccggggccgggtcgggcgctcgaaggcgcgcgcctatgcctatctcacgacg
aagccccgcgcgcccctgacggcgcaggcgcagaaacggctgcgcgtgttgggctcgctc
gacacgctgggggcgggcttcacgctggcctcacaggatctcgacatccgcggcgccggc
aacttgatcggcgaggaacagtcgggccatgtccgcgaggtcggcttcgagctttaccag
tcgatgctggaagaggcgatcgccaagatcaggtcgggcgagctggagggcatgacggat
accgacagcgactggtcgccccagatcaatctgggcgtgccggtgctgatccccgacgat
tacgtccccgatctcgacgtgcggctggggctgtaccggcggctctcgacgctctcgacc
aaggtcgagctggaaggtttcgcggccgagctgatcgaccgcttcggcaagctgccgaaa
gaggtcaacacgcttctgctggtcgtgcgcatcaaggcgatgtgcaagcgtgcgggcatc
gcccggctcgatggcgggcccaagggcgccacggtgcagtttcacaatgacaaattcgcc
aatccggcagggcttgtggccttcatccaggaccagcaggggctggccagggtcaaggac
aacaagatcatcctgcgccgcgactggaagaaggacagcgacaagatcaagggtgccttc
gccatcgcccgcgacctggcggacaagctgcgcgaaaccgcctga
DBGET
integrated database retrieval system