KEGG   Rhodovulum sp. MB263: B5V46_09210
Entry
B5V46_09210       CDS       T04771                                 
Name
(GenBank) transcription-repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
rhm  Rhodovulum sp. MB263
Pathway
rhm03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:rhm00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    B5V46_09210
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rhm03400]
    B5V46_09210
Enzymes [BR:rhm01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     B5V46_09210
DNA repair and recombination proteins [BR:rhm03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      B5V46_09210
SSDB
Motif
Pfam: TRCF DEAD UvrB_inter CarD_TRCF_RID Helicase_C ResIII MFD_D3 AAA_30 UB2H AAA_16 SecA_DEAD RecG_dom3_C
Other DBs
NCBI-ProteinID: ARC88783
UniProt: A0A1V0HXX4
LinkDB
Position
1976137..1979601
AA seq 1154 aa
MEEQRHITAGGAPEGYDARLLARELTRSGRPILHVARDDKRLAAMRAALAFFAPEAVVLD
FPAWDCLPYDRVSPNADVEAARMATLAGLAAGLSGPFILLTTLNAATQRVPARALLQGAS
FTARVGMQIDEAALRAFLVRMGFTQAPTVMEPGDYAIRGGIVDIYPPGEAGPVRLDLFGD
VLDGARRFDPATQRTTEKLKSVELAPVSEVILDEAAITRFRQNYRIEFGAAGTDDPLYEA
VSAGRKHAGVEHWLPFFHDRLETLFDYLPEAAVYLDDQVTPARLARWETIEDQYQNRREA
MAQKGRIDTVYKPCPPGLMYLDDAAWEAALADRRLVQLAPLPQGLGPGVIDAGGRIGRNF
APERKLEQVSLFSALKDHIQARREEGAVVVASYSEGARERLKGLLEDEELTDATLVSDIR
EVTGARGLHLAVWALEHGFEGPGLTVISEQDVLGERLIRGPKKRRRAENFLTETQSLSPG
DLVVHVEHGVGRYMGLETVAVPDPATGKPGAPHEFLLLVYAEDGKLYVPVENIELLSRYG
HDEGLLDRLGGGAWQARKARLKERIREMADKLIRVAAERVLRHAPILEPGHHMWEAFSAR
FPYQETDDQLAAIEDVLTDMASGTPMDRLICGDVGFGKTEVAMRAAFVAAMSGVQVAVVA
PTTLLARQHAKGFAERFRGFPVEVRQLSRFVPAREAAATRAGLAEGTVDICIGTHALLAK
SVKFRNLGLLIIDEEQHFGVAHKERLKQMRSDVHVLTLTATPIPRTLQMSLTGVRDLSII
GTPPVDRLSIRTYVSEFDTVTIREALLREHYRGGQSFFVVPRVRDLPDMEHFLREQVPEV
SFITAHGQLAAGDLDERMNAFYDGKYDVLLATTIVESGLDIPTANTMIVHRADMFGLAQL
YQIRGRVGRSKARAYAYLTTKPRAPLTAQAQKRLRVLGSLDTLGAGFTLASQDLDIRGAG
NLIGEEQSGHVREVGFELYQSMLEEAIAKIRSGELEGMTDTDSDWSPQINLGVPVLIPDD
YVPDLDVRLGLYRRLSTLSTKVELEGFAAELIDRFGKLPKEVNTLLLVVRIKAMCKRAGI
ARLDGGPKGATVQFHNDKFANPAGLVAFIQDQQGLARVKDNKIILRRDWKKDSDKIKGAF
AIARDLADKLRETA
NT seq 3465 nt   +upstreamnt  +downstreamnt
atggaagagcagcgtcatatcaccgccggcggcgcccccgaagggtacgatgcccggctt
cttgcccgcgagctgacccggagcggccggcccatccttcatgtcgcccgcgacgacaag
cggctggcggcgatgcgcgcggcgctggccttcttcgcgcccgaggcggtcgtgctcgac
tttccggcctgggactgcctgccctatgaccgggtctctcccaatgccgatgtcgaggcg
gcgcggatggcaacgctggcggggctggccgcggggctgtccggcccctttatcctgctg
accacgctgaatgccgcgacccagagggtacccgcacgcgcgctgttgcagggggcctcc
ttcaccgcgcgggtcggcatgcagatcgacgaggcggcgctgagggcctttctcgtccgg
atggggttcacccaggcgccgacggtgatggaacccggcgattacgcgatccggggcggc
atcgtcgatatctatccgccgggcgaggccgggccggtgcggctcgatctcttcggcgat
gtgctcgacggcgcgcgccgcttcgatccggcgacccagcgcaccaccgagaaactgaaa
tcggtcgaactggcgccggtctcggaggtcattctggacgaggccgcgatcacccgcttc
cggcagaattaccggatcgaattcggcgcggcgggcaccgatgacccgctttacgaggcg
gtgagcgcggggcgcaagcatgcgggcgtcgagcactggctgcccttcttccatgaccgg
ctcgagacgcttttcgactatctgccggaggccgcggtctatctcgacgatcaggtgacg
cctgcgcggctggcgcgctgggagaccatcgaggaccagtaccagaaccggcgcgaggcg
atggcgcagaagggccggatcgacacggtctacaagccctgtccgccgggcctgatgtat
cttgacgacgccgcctgggaggctgccctggccgatcgccggctggtgcagctggccccg
ctgccgcagggtctgggcccgggcgtgatcgatgcgggcggccgtatcgggcgcaatttc
gcgcccgagcgcaagctggaacaagtcagtcttttcagcgccttgaaggatcatatccag
gcgcggcgcgaagagggcgcggtcgtggttgcctcctattcagagggcgcgcgcgagcgg
ctgaagggcttgctcgaagacgaggagctgaccgacgcgacgctggtctcggatattcgc
gaggtgaccggggcacgcgggctgcatctggcggtctgggcgctcgaacatggtttcgag
gggccggggctgaccgtcatctcggaacaggacgtgctgggcgagcggctgatccgcggt
ccgaaaaagcgccgccgggccgagaatttcctgaccgagacgcagtcgctctcgcccggc
gatctggtcgtgcatgtcgagcacggggtcggccgctacatggggctcgagaccgtggcg
gtgcccgacccggccaccggcaagcccggcgcgccgcatgaattcctgcttctggtctat
gccgaggatggcaagctttacgtcccggtcgagaatatcgagctgctcagccgctatggc
catgacgaggggctgctcgaccggctgggcggcggcgcctggcaggcgcgcaaggccagg
ctcaaggaacgcatccgcgagatggccgacaagctgatccgggtcgcggccgagcgtgtg
ctgcgccatgccccgatcctggagcccggtcatcacatgtgggaggcgttctctgcgcgc
ttcccctatcaggagaccgacgaccagctggccgcgatcgaggacgtgctgaccgacatg
gcctcgggcacgccgatggaccggctgatctgcggcgatgtgggcttcggcaagaccgag
gtcgcgatgcgcgcggccttcgtcgcggcgatgtcgggcgtgcaggtcgcggtggtggcg
ccgacgacgctgctggcgcgccagcatgccaagggctttgccgagcggttccggggcttc
ccggtcgaggtccggcagctctcgcgcttcgtgcccgccagggaggccgccgcgacacgc
gcggggctggccgagggcacggtcgatatctgcatcggcacccatgcgcttctggccaag
agcgtgaagttccgcaatctgggcctgctgatcatcgacgaggaacagcatttcggcgtc
gcccacaaggagaggctgaagcagatgcgctcggatgtgcatgtgctgaccctgaccgcg
accccgatcccgcgcaccctgcagatgagcctgaccggcgtgcgcgatctctcgatcatc
ggcacgccgcccgtcgaccggctgtcgatccggacctatgtcagcgaattcgataccgtc
accatccgcgaggcgctgctgcgcgaacattatcgcggcgggcagagcttcttcgtggtg
ccccgcgtcagggacctgcccgacatggagcatttcctgcgcgagcaggttcccgaggtc
agcttcatcaccgcccatggccagttggcggcgggcgatctcgacgagcggatgaatgcc
ttctacgacggcaaatatgacgtgctgctggccacgaccatcgtggaatccgggctcgac
atcccgaccgcgaacacgatgatcgtgcaccgcgccgacatgttcgggctggcgcagctg
taccagatccggggccgggtcgggcgctcgaaggcgcgcgcctatgcctatctcacgacg
aagccccgcgcgcccctgacggcgcaggcgcagaaacggctgcgcgtgttgggctcgctc
gacacgctgggggcgggcttcacgctggcctcacaggatctcgacatccgcggcgccggc
aacttgatcggcgaggaacagtcgggccatgtccgcgaggtcggcttcgagctttaccag
tcgatgctggaagaggcgatcgccaagatcaggtcgggcgagctggagggcatgacggat
accgacagcgactggtcgccccagatcaatctgggcgtgccggtgctgatccccgacgat
tacgtccccgatctcgacgtgcggctggggctgtaccggcggctctcgacgctctcgacc
aaggtcgagctggaaggtttcgcggccgagctgatcgaccgcttcggcaagctgccgaaa
gaggtcaacacgcttctgctggtcgtgcgcatcaaggcgatgtgcaagcgtgcgggcatc
gcccggctcgatggcgggcccaagggcgccacggtgcagtttcacaatgacaaattcgcc
aatccggcagggcttgtggccttcatccaggaccagcaggggctggccagggtcaaggac
aacaagatcatcctgcgccgcgactggaagaaggacagcgacaagatcaagggtgccttc
gccatcgcccgcgacctggcggacaagctgcgcgaaaccgcctga

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