Rhodoferax sp. BAB1: HTY51_18020
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Entry
HTY51_18020 CDS
T08955
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
rhob
Rhodoferax sp. BAB1
Pathway
rhob03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rhob00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HTY51_18020 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rhob03021
]
HTY51_18020 (rpoB)
03400 DNA repair and recombination proteins [BR:
rhob03400
]
HTY51_18020 (rpoB)
Enzymes [BR:
rhob01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HTY51_18020 (rpoB)
Transcription machinery [BR:
rhob03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HTY51_18020 (rpoB)
DNA repair and recombination proteins [BR:
rhob03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HTY51_18020 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
RNA_pol_Rpb2_1
DUF5887
Motif
Other DBs
NCBI-ProteinID:
QKO23655
LinkDB
All DBs
Position
3719706..3723818
Genome browser
AA seq
1370 aa
AA seq
DB search
MAYTYTERKRIRKSFGSRDSVLEIPYLLQMQKDAYTAFLQADLAPTKRTPEGLQAAFEAA
FPIVSHNGFVEMKFLEYNLAKPAFDVRECQTRGLTFASAVRARVQLIIYDRESSTPQNKV
VKEVKEQEVYMGEVPLMTTKGSFIINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFS
ARIIPYRGSWLDFEFDPKDILYFRVDRRRKMPVTILLKAIGLNPESILANFFVNDNFRLM
DSGAQMEFVAERLRGEVARFDITDKSGKVIVAKDKRITARHTRDLEQSATTHISVPEDFL
VGRVVARNIVDPDTGEIIAKANDELTDALLKKLRSAGVQDLQCIYTNELDQGAYISQTLR
VDETTDEFAARVAIYRMMRPGEPPTEDAVQALFQRLFYNPDTYDLSRVGRMKFNAKMGRN
DPNGPMVLTNEDILAVVKILVDLRNGRGEVDDIDHLGNRRVRCVGELAENQYRAGLARIE
KAVKERLGQAEQEPLMPHDLINSKPISAALKEFFGASQLSQFMDQTNPLAEITHKRRVSA
LGPGGLTRERAGFEVRDVHVTHYGRVCPIETPEGPNIGLINSLALYARLNEYGFIETPYR
RVVDGKVTMQIDYLSAIEEGKYVIAQANATLDKDGRLTDELVSARETGESILCGAERIQY
MDVSPAQIVSVAASLVPFLEHDDANRALMGANMSRQAVPVLRPEKPLVGTGIERVAAVDS
GTVVTANRGGVVDYVDATRIVVRVNDAEALAGEVGVDIYNLIKYQRSNQNTNIHQRPIVK
KGDKLAKGDVIADGASTDLGEIAIGQNMLIAFMPWNGYNFEDSILISERVVAEDRYTSIH
IEELVVMARDTKLGAEEITRDIPNLSEQQLNRLDESGIIYVGAEVMPGDTLVGKVTPKGE
TTLTPEEKLLRAIFGEKASDVKDTSLRVDQGSQGTVIDVQVFTREGITRDKRAQQIIDDE
LKRYRLDLNDQLRIVEADAFDRIEKLLNGKVANGGPQKLAKGTKIDKAYLASVEKFHWFD
IRPADDEVASQLESIKNSIEQQRHSFDLAFEEKRKKLTQGDELPAGVLKMVKVYLAVKRR
LQPGDKMAGRHGNKGVVSKIVPIEDMPHMADGTPCDIVLNPLGVPSRMNVGQVLEVHLGW
AAKGIGHRIGDMLQAEAKAAELRAYMDKLYNSSGRKEDLSKLTDAQVVEMATNLSNGVTF
ATPVFDGASEDEIREMLKLAYPEHVAKAKGLTATRTQAQLYDGRTGDAFERTTTVGYMHF
LKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLT
VKSDDVQGRTKVYENIVKGEHAIEAGMPESFNVLVKEIRSLGLDIELERS
NT seq
4113 nt
NT seq
+upstream
nt +downstream
nt
atggcctatacctataccgaacgcaagcggattcgcaagagtttcggcagccgcgacagc
gtgctcgaaatcccctacctgctgcagatgcagaaggatgcctacacggccttcctgcag
gcggaccttgcgcccaccaaacgtactcccgagggcctgcaggccgcttttgaagccgcc
ttccccatcgtctcgcacaacggttttgtggagatgaagttcctggaatacaacctggcc
aagcccgccttcgatgtgcgcgaatgccagacgcgcggcctgaccttcgcgtccgccgtg
cgcgcacgcgttcagctcatcatctacgatcgtgagtcctcgacgccgcagaacaaggtg
gtcaaggaagtgaaggagcaggaagtctatatgggcgaagtgccgctcatgacgaccaag
ggttccttcatcatcaacggtaccgagcgcgtcatcgtgtcgcagctgcaccgttcgccg
ggtgtgttcttcgaacacgacaagggcaagacccacagctcgggcaagctgctgttctcc
gctcgcatcatcccctaccgcggttcctggctggacttcgagttcgacccgaaggacatc
ctgtacttccgcgtcgaccgccgtcgcaagatgccggtcaccatcctgctcaaggccatc
ggcctgaaccccgagtccatcctggcgaacttcttcgtcaacgacaacttccgcctgatg
gacagcggcgcgcagatggaattcgtggccgagcgtctgcgtggtgaagtcgcccgcttc
gacatcaccgacaagagcggcaaggtcatcgtcgccaaggacaagcgcatcaccgcgcgt
cacacccgcgatctggagcagtccgccaccacccacatcagcgtgccggaagactttctg
gtcggccgtgtggtggcccgcaacatcgtcgatccggacaccggcgaaatcatcgccaag
gccaatgacgagctgaccgacgcgctgctcaagaagctgcgcagcgccggcgtgcaggac
ctgcagtgcatctacaccaacgaactcgaccagggcgcctacatctcgcagaccctgcgc
gtggatgagaccaccgacgagttcgccgcccgcgtggccatctaccgcatgatgcgcccc
ggcgagccgccgactgaagacgcggtgcaggccctgttccagcgtctgttctacaacccg
gacacctacgacctgtcgcgcgtgggccgcatgaagttcaacgccaagatgggtcgcaac
gacccgaatggccccatggtgctgaccaatgaggacatcctcgccgtggtcaagatcctg
gtggacctgcgcaacggccgtggtgaagtggacgacatcgaccacctgggcaaccgccgc
gtgcgttgcgtcggcgaactcgccgagaaccagtaccgcgccggtctggcccgtatcgag
aaggctgtgaaggagcgtctgggccaggcggagcaggaacccctgatgccgcacgacctg
atcaactccaagccgatctccgcggccctcaaggagttcttcggtgcctcgcagctctcg
cagttcatggaccagaccaacccgctggccgagatcacccacaagcgccgtgtctcggct
cttggcccgggcggtctgacgcgcgagcgtgccggcttcgaagtgcgcgacgtgcacgtc
acgcattacggccgtgtctgcccgatcgagacgccggaaggcccgaacatcggcctgatc
aactcgctggccctgtacgcccgcctgaacgaatacggtttcatcgagaccccgtaccgt
cgtgtggtggacggcaaggtgacgatgcagatcgactacctgtccgccatcgaggaaggc
aagtacgtcatcgcccaggccaacgccacgctggataaggacggccgcctgaccgacgag
ctggtctcggcccgtgaaaccggcgagtccatcctgtgcggcgccgagcgcatccagtac
atggacgtgtccccggcacagatcgtctccgtggccgcttcgctggtgcccttcctggag
catgacgacgccaaccgcgcgctgatgggcgccaacatgtcgcgccaggccgtgcccgta
ctgcgtccggaaaagccgctggtcggcaccggcatcgagcgtgtggctgccgtggactcc
ggcaccgtggtgacggccaaccgcggcggtgtggtcgactacgtcgatgccacccgtatc
gtggtgcgcgtcaacgacgccgaggccctggccggtgaagtgggcgtggacatctacaac
cttatcaagtaccagcgttccaaccagaacaccaacatccaccagcgtcccatcgtcaag
aagggcgacaagctggccaagggtgacgtgatcgccgacggcgcgtcgaccgacctgggc
gagatcgccatcggccagaacatgctgatcgccttcatgccctggaacggctacaacttc
gaggactcgatcctgatctcggagcgcgtcgtcgccgaagaccgctacacctcgatccac
atcgaggaactggtggtcatggcgcgtgacaccaagctcggtgccgaggaaatcacccgc
gacatccccaacctgtctgaacagcagctgaaccgcctggacgagtccggcatcatctac
gtgggtgccgaagtcatgcccggcgacacgctggtaggtaaggtcacgcccaagggcgag
accacgctgacgccggaagagaagctgctgcgcgccatcttcggcgagaaggccagcgac
gtgaaggacacttcgctgcgtgtggaccagggctcgcagggcaccgtcatcgacgtgcag
gtcttcacccgtgaaggcatcacgcgcgacaaacgcgcccagcagatcatcgacgacgag
ctcaagcgttaccgcctggacctgaacgaccagctgcgcatcgtggaagccgacgccttc
gaccgtatcgagaagctgctcaacggcaaggtcgccaacggcggcccgcagaagctggcc
aagggcacgaagatcgacaaggcctatctggccagcgtcgagaagttccactggttcgac
atccgcccggcggacgacgaagtggcttcgcagctcgaatcgatcaagaactcgatcgag
cagcagcgccacagctttgacctggccttcgaagagaagcgcaagaagctcacgcagggc
gacgaactgccggcgggcgtgctgaagatggtcaaggtctacctggccgtcaagcgccgc
ctgcaacccggcgacaagatggccggccgccacggcaacaagggtgtggtgtccaagatc
gttccgatcgaagacatgccccatatggccgacggcacgccgtgcgacatcgtgctcaac
cccctgggcgtgccctcgcgcatgaacgtgggccaggtgctggaagtgcacctgggctgg
gctgccaagggtatcggccaccgcatcggcgacatgctgcaggcggaagccaaggcggcc
gagctgcgcgcctacatggacaagctctacaacagctcgggccgcaaggaagacctcagc
aagttgaccgatgcgcaagttgtcgagatggcaaccaacctgtcgaatggcgtgaccttc
gccaccccggtgttcgacggcgcctcggaagacgagatccgcgagatgctcaagctggcc
tacccggagcacgtggccaaggccaagggcctgaccgcgacgcgcacgcaggcgcagctg
tatgacggccgcaccggcgacgccttcgagcgcacgaccacggtgggttacatgcacttc
ctgaagctgcaccacctggtggacgacaagatgcatgcccgttcgaccggcccgtactcc
ctggtcacccagcagccgctgggcggcaaggcgcagttcggcggccagcgtttcggcgag
atggaggtctgggcgctggaagcgtacggcgccgcctacacgctgcaggaaatgctcacc
gtcaaatccgacgacgtgcagggccgtaccaaggtctacgagaacatcgtcaagggcgag
catgccatcgaagccggcatgcccgagtcgttcaacgtgctggtcaaggaaatccgttcc
ctgggcctggacatcgagctcgagcgctcctaa
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