Rhodococcus sp. RCBS9: P0M12_21030
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Entry
P0M12_21030 CDS
T11459
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
rhrc Rhodococcus sp. RCBS9
Pathway
rhrc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rhrc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
P0M12_21030 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rhrc03021
]
P0M12_21030 (rpoB)
03400 DNA repair and recombination proteins [BR:
rhrc03400
]
P0M12_21030 (rpoB)
Enzymes [BR:
rhrc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
P0M12_21030 (rpoB)
Transcription machinery [BR:
rhrc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
P0M12_21030 (rpoB)
DNA repair and recombination proteins [BR:
rhrc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
P0M12_21030 (rpoB)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
WEX02134
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Position
4445819..4449325
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AA seq
1168 aa
AA seq
DB search
MLEGRILAVSSQTKAVSGIPGAPKRVSFAKVREPLEVPGLLDVQTDSFEWLIGAQSWRER
AAALGDNAVSGGLEDILAELSPIEDFNGTMSLSFSDPRFDEVKASTDECKDKDMTYAAPL
FVTAEFINNNTGEIKSQTVFMGDFPMMTDKGTFIINGTERVVVSQLVRSPGVYFDMSVDK
STEKDLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTTEQITERFG
FSEILMATLEKDNTAGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKDKRYDLARVGR
YKINKKLGLNAGQPIVASTLTEEDIVATVEYLVRLHAGDTSMTAPGGVEVPVEVDDIDHF
GNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIREFFGT
SQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIETPEGPN
IGLIGSLSVYARVNPFGFIETPYRRVVDGQVTDEVDYLTADEEDRHVVAQANSAIDREGR
FTDSKILVRRKGGEVEFVASSDIDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQR
QAVPLVRSEAPLVGTGMELRAAVDAGDVIITEKTGVVEEISADYVTVMADDGSRKTYRMR
KFARSNQGTCANQRPIVDEGQRVEAGQVLADGPCTENGEMALGKNLLVAIMPWEGHNYED
AIILSQRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGIIRIG
AEVRDGDVLVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGETGKVIGIRVF
SRDEDDDLPPGVNELVRVYVAQKRKIQDGDKLAGRHGNKGVIGKILPQEDMPFLSDGTPV
DIILNTHGVPRRMNIGQVLETHLGWIGKTGWNVQIASDGSRPDWAATLPEEMLSAPADSN
IATPVFDGAKEDELTGLLGATLPNRDGEQMVGPDGKATLFDGRSGEPFPYPVSVGYMYII
KLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTI
KSDDVVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAITMADGD
DEDLERAAANLGINLSRNEAATVDDLAN
NT seq
3507 nt
NT seq
+upstream
nt +downstream
nt
gtgctggaaggacgcatcttggcagtctctagccagaccaaggcagtttccggaatcccc
ggagccccgaagagggtttcgttcgcgaaagttcgcgaacccctcgaagttcccgggctt
cttgacgtacagacagattcgttcgagtggctgatcggcgcgcagagttggcgtgaacga
gcagcggcactcggcgacaatgcagtgtccggtggtctcgaggacatcctcgcggagctt
tctccgatcgaggatttcaacggcactatgtcgctgtccttctccgaccctcgattcgac
gaggtcaaggcctcgacggacgagtgcaaagacaaggacatgacctacgcggcgccgttg
ttcgtcaccgcggagttcatcaacaacaacactggtgagatcaagagccagacggtcttc
atgggagatttcccgatgatgaccgacaagggcaccttcatcatcaacggcaccgagcgt
gtggtcgtctcgcagctcgtgcgttcccccggtgtgtacttcgacatgagcgtcgacaag
agcaccgagaaggatctgcacagcgtcaaggtgatcccgggtcgcggcgcatggctcgag
ttcgacgtcgacaagcgcgacaccgttggtgtccgtatcgaccgcaagcgtcgtcagcct
gtcaccgtcctgctcaaggcactcggctggaccaccgagcagatcacggagcgcttcggc
ttctccgagatcctcatggccacgctggagaaggacaacaccgccggcaccgatgaggcg
ttgctcgacatctaccgcaagctgcgtccgggcgagccccccaccaaggagagcgcgcag
accctgctggagaacctgttcttcaaggacaagcgctacgacctcgctcgcgtgggtcgt
tacaagatcaacaagaagctcggcctgaacgcgggtcagccgatcgttgcatccactctc
accgaagaagacatcgtcgccaccgtcgagtacctcgtgcgtctgcacgcaggtgacacc
tcgatgacggctccgggcggcgtcgaggttcccgtcgaggtcgacgacatcgaccacttc
ggcaaccgtcgtctgcgtacggtcggcgagctcatccagaaccagatccgcgtgggcctg
tcccgcatggagcgtgtggttcgtgagcgcatgaccacgcaggacgtcgaggcgatcacg
cctcagacgctgatcaacatccgtcccgtcgtcgctgcgatcagggagttcttcggaacc
tcccagctgtcgcagttcatggaccagaacaacccgctgtcggggctgacgcacaagcgt
cgtctgtccgccctcggcccgggtggtctgtcccgtgagcgcgccggcctcgaggttcgc
gacgttcacccgtcgcactacggccgcatgtgcccgatcgagaccccggaaggcccgaac
atcggcctgatcggttcgctgtcggtctacgcccgcgtcaacccgttcggtttcatcgag
accccgtaccgtcgcgtcgtcgacggacaggtgaccgacgaggtcgactacctgaccgct
gacgaagaagaccgccacgtggtcgcgcaggccaactcggccatcgaccgcgagggtcgc
ttcaccgactcgaagattctcgtccgccgtaagggtggcgaggtcgagttcgtcgcgtcc
tcggacatcgactacatggacgtttcgccgcgtcagatggtgtccgtcgcaaccgcgatg
attccgttcctcgagcacgacgatgcaaaccgtgccctgatgggcgcgaacatgcagcgt
caggctgtcccgctggttcgcagcgaggcacctctcgtcggaaccggcatggagctgcgt
gcagctgtggatgccggcgacgtcatcatcaccgagaagaccggtgtcgtggaggagatc
tctgcggactacgtcacggtgatggctgacgacggaagccgcaagacgtaccggatgcgc
aagttcgcgcgttccaaccagggcacgtgcgccaaccagcgtccgatcgtggacgaggga
cagcgtgtcgaggccggccaggttctggccgacggcccttgcaccgagaacggtgagatg
gcgctgggcaagaacttgctcgtcgcgatcatgccgtgggaaggccacaactacgaggac
gcgatcattctgtcgcagcgtctcgtggaagaggacgtcctgacctcgattcacatcgag
gagcacgagatcgatgcccgcgacaccaagctcggtgccgaggaaatcactcgcgacatc
ccgaacgtctccgacgaggtcctcgccgacctcgacgagcgcggcatcatccgtatcggt
gccgaggttcgtgacggcgacgtgctggtcggaaaggtcacgccgaagggcgagaccgag
ctgacccccgaagagcgcctccttcgcgccatcttcggtgagaaggctcgcgaggttcgt
gacacgtccctcaaggttcctcacggtgagaccggcaaggtcatcggaatccgcgtgttc
tcgcgtgacgaagacgacgatctgcctcccggtgtcaacgagctggtccgcgtctacgtg
gcacagaagcgcaagatccaggacggcgacaagctcgccggccgccacggtaacaagggc
gtcatcggcaagatcctgccgcaggaagacatgccgttcctctcggacggcacgcctgtc
gacatcatcttgaacacgcacggcgtcccgcgtcgtatgaacatcggtcaggtcttggag
acccacctcgggtggatcggcaagaccggctggaacgttcagatcgcgtccgacggctct
cgtcccgactgggctgcgaccctgccggaagagatgctgtccgctccggccgactcgaac
atcgccaccccggtgttcgacggtgcgaaggaagacgagctcaccggtctcctcggcgcg
acgctgccgaaccgtgacggcgagcagatggtcggacccgacggaaaggccaccttgttc
gacggccgctccggcgagccgttcccgtacccggtctcggtcggttacatgtacatcatc
aagctgcaccacttggtcgacgacaagatccacgctcgttcgaccggtccgtactcgatg
atcacgcagcagcctctcggtggtaaggcccagttcggtggccagcgcttcggtgagatg
gagtgctgggcgatgcaggcctacggcgcggcttacacgctgcaggaactgctgaccatc
aagtctgacgacgtggtcggtcgagtcaaggtgtacgaagccatcgtcaagggcgagaac
atccccgaacccggcatccccgagtcgttcaaggtgctcctcaaggagctccagtcgctc
tgcctcaacgtggaggtgctgtcctcggacggcgcggccatcacgatggcggacggcgac
gacgaggacttggagcgggccgcagcgaacctgggcatcaacctgtccaggaacgaagct
gcgacggtcgacgacctcgcgaactag
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