Rhodococcus sp. SGAir0479: E7742_10780
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Entry
E7742_10780 CDS
T11403
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
rhsq Rhodococcus sp. SGAir0479
Pathway
rhsq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rhsq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
E7742_10780
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rhsq03019
]
E7742_10780
03009 Ribosome biogenesis [BR:
rhsq03009
]
E7742_10780
Enzymes [BR:
rhsq01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
E7742_10780
Messenger RNA biogenesis [BR:
rhsq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
E7742_10780
Ribosome biogenesis [BR:
rhsq03009
]
Prokaryotic type
rRNA processing factors
E7742_10780
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
QCQ93888
LinkDB
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Position
complement(2303380..2306649)
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AA seq
1089 aa
AA seq
DB search
MQEPIAEATVNPGTTPVLPEKIRVHALAKLLGVTSKQVLAEAAALGTELRSAQSSLQRDV
AEQIHATMSGAAEPAAQPQTPERETPAAETPAAETPAVETSAAEDAPESPADAAAPVAEP
AEKPAPRKRARKKAAPKAQAAPEPETAPEPQAEQAAPAADESAPAGGGLFTHAELGSEQQ
QPAAAPVVQAPLFLQPEAVAAEPAPRRRRSRRAAAAPEVSEERQSTEDTTPAAATVEDET
PTESAQAAETPESSASSEASGTAESTESGDGETGDQQRRRRRGRRGRGRGRGEQAADGTE
SDETEDGAAAEAETGAAETPQPAEGGESTASTETGDDESTDDDASDGSSRRRRRRRRRKG
GTDGEAAADDDPPNTVVHEREPRNKARAKDKDKDEVQGISGSTRLEAKRQRRRDGRDAGR
RRPPILSESEFLARRESVDRVMVVREKSGANPAASTQVAVLEDGILVEHFVTGSSSPSMV
GNVYLGRVQNVLPSMEAAFIDIGRGRNGVLYAGEVNWEAAGLGGRERKIEQALRPGDQVL
VQVSKDPVGHKGARLTTQISLAGRFLVYVPGGTSTGISRKLPDTERKRLKEILREIVPAD
AGVIIRTASEGVSEEELARDVTRLQTQWETIEEQATKAKEGKSGTPQALYEEPDLLVKVV
RDLFNEDFSKLVIEGEKAWNTVETYIKTVAPDLLPRVERHDPEPGSPDVFATHRIDEQLV
KALDRKVWLPSGGTLVIDRTEAMTVVDVNTGKFTGAGGNLEETVTRNNLEAAEEIVRQMR
LRDIGGMIVVDFIDMVLESNRDLVLRRLTEALGRDRTRHQVSEVTSLGLVQMTRKKLGTG
LVEAFSTTCEHCHGRGIVVHAEPVEVKSGDDGRGQAKESGGRKKRGRDRAAASTPEQPAN
GQHAQPAVEESADASVKRAHPVALAMAAHHSDDAESSAEPEAHGGARSGATEAAEAKTAP
EKNESVPAEAEKAEPAKSEPVKSEPEKSESGAEASAPRARRRSRRVSRAAAAPAGETPEA
GTVFVLPASEPASEPAAEAPTETADAPAAAASVPGTPDSAGDGESDTQPARRPRRRRAAA
RPAGPPVDA
NT seq
3270 nt
NT seq
+upstream
nt +downstream
nt
gtgcaggaaccgatcgcggaagcgacggtgaaccccggcaccacccctgtacttcccgag
aagattcgcgtccatgcgctggccaaactgctcggagtgacgagcaagcaggtcctcgcc
gaggccgccgctctgggcaccgagttgcgcagcgcgcaatccagcctgcagcgtgacgtc
gccgagcagatccacgcgacgatgtccggtgccgcagagcccgccgcgcaaccgcagact
ccggagcgggagaccccggccgccgagaccccggccgccgaaaccccggctgtcgagact
tccgctgccgaggacgcacccgagtccccggcggacgccgccgcaccggtggccgagcct
gcggagaagcccgccccgcgcaagcgcgcccggaagaaggccgcccccaaggcgcaggcc
gcgcccgagccggagactgcccccgagccccaggccgagcaggcggctcccgccgcggac
gaatcggcgcccgccggtggtggactgttcacccacgccgaactcggcagcgagcagcag
cagccggccgcggcacccgtcgtgcaggccccgctgttcctgcagcccgaggccgtcgcc
gccgaacccgcaccgcgacgtcgtcgcagtcgccgggccgcggccgcgcccgaggtgagc
gaggagcggcagtccaccgaggacacgacgccggccgcggcgaccgtcgaagacgagacc
ccgaccgagtcggcgcaggccgcagagacccctgagtcctccgcgtcctccgaggcttcc
gggaccgctgagtccaccgagtccggtgacggcgagaccggcgaccagcagcgtcgccgc
cgtcgtggacggcgtgggcgcggtcgtggtcgcggcgagcaggccgccgacgggaccgag
tcggacgagaccgaggacggcgccgcggcggaggccgagaccggtgccgccgagaccccg
cagcccgccgagggtggcgagtccaccgcgtcgaccgaaaccggcgacgacgagagcacg
gacgacgacgcctccgatggctcgagccgtcggcgccgtcggcgtcggcgccgcaagggc
ggcaccgacggagaagccgcggccgacgacgatccgcccaacaccgtcgtccacgaacgc
gagccgcggaacaaggcacgcgcgaaggacaaggacaaggacgaggtccagggcatcagc
ggctccacccgtctggaagccaagcgtcagcgccgccgggacggccgcgacgccggccgt
cgtcgtccgccgatcctgagcgagtccgagttcctggctcgccgggagtcggtcgaccgc
gtgatggtcgtgcgcgagaagagtggggccaaccccgcagcgtcgacgcaggtcgccgtt
ctcgaggacggaatcctggtcgagcacttcgtgacgggttcgtcgtcgccgtccatggtc
ggcaacgtgtacctcggccgcgtgcagaacgtgctgcccagcatggaggccgcgttcatc
gacatcggtcggggacgcaacggtgtgctgtacgccggtgaggtcaactgggaggccgcc
ggcctcggcggacgcgaacgcaagatcgagcaggccctccggcccggcgaccaggtgctg
gtgcaggtcagcaaggatccggtgggccacaagggcgcccgcctgaccacgcagatcagt
ctggccggccgcttcctcgtgtacgtgcccggtggcacgtccaccggtatcagccgcaag
ctgcccgacaccgagcgcaagcgcctcaaggagatcctccgcgagatcgtcccggccgat
gccggagtgatcatccggaccgcctccgagggcgtcagcgaggaggaactggcccgggac
gtcacccgtctgcagacgcagtgggagaccatcgaggagcaggccaccaaggcgaaggag
ggcaagtcgggcacgccgcaggcgctgtacgaggagcccgacctgctggtgaaggtcgtc
cgcgacctcttcaacgaggacttctccaagctcgtcatcgagggtgagaaggcctggaac
accgtcgagacctacatcaagaccgttgcgccggacctgctgccgcgcgtggagcggcac
gatcccgaaccgggcagcccggacgtgttcgccacgcaccgcatcgacgagcagctcgtc
aaggcgctcgaccgcaaggtgtggctgccgtcgggcggcacgctcgtgatcgatcgcacc
gaggccatgacggtcgtcgacgtcaacaccggaaagttcaccggtgccggcggcaacctc
gaggagacggtcacccgcaacaacctcgaggcggccgaggagatcgtgcggcagatgcgc
ctgcgcgacatcggcggcatgatcgtggtcgacttcatcgacatggtgctcgaatccaat
cgggacctggtgctgcggcgcctgacggaggcactcggtcgcgaccgcacgcgccatcag
gtgtccgaggtgacgtcgctcggcctggtccagatgacccgcaagaagctgggcaccggc
ctggtcgaggcgttctccaccacgtgtgagcactgccacggccgcggcatcgtcgtccat
gccgagccggtggaggtgaagtccggagacgacggtcgcggacaggccaaggagtccggc
gggcgcaagaagcgcggtcgggaccgggccgcggcctcgaccccggagcagccggcgaac
gggcagcacgcccagccggcggtggaggaatccgccgacgcgtcggtcaagcgcgctcat
ccggtggcgctcgcgatggccgcgcaccactccgacgacgccgagagctccgcggagccg
gaggcccacggcggcgctcgatccggtgcgacggaagctgccgaggcgaagaccgccccg
gagaagaacgagtcggtcccggccgaggccgagaaggcggaaccggcgaagtccgaaccg
gtcaagtccgaacccgagaagagtgaatcgggcgccgaggcctcggcaccgcgcgcgcgg
cgccgtagccgtcgggtctcgcgggccgcggccgcgccggccggtgagacgccggaagcg
ggcaccgtgttcgtgctgcctgcctcggaacccgcctccgaacccgccgcggaggccccc
accgagaccgccgacgcgccggccgccgccgcgtcggttccgggtaccccggactcggcc
ggcgacggagagagcgacacgcagcccgcgcgtcgacctcgccgacggcgcgccgcggcg
cgccccgccggtccgccggtggacgcgtag
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