Rhodococcus sp. WB9: FND50_27970
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Entry
FND50_27970 CDS
T11350
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
rhwb Rhodococcus sp. WB9
Pathway
rhwb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rhwb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FND50_27970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rhwb03021
]
FND50_27970
03400 DNA repair and recombination proteins [BR:
rhwb03400
]
FND50_27970
Enzymes [BR:
rhwb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FND50_27970
Transcription machinery [BR:
rhwb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FND50_27970
DNA repair and recombination proteins [BR:
rhwb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FND50_27970
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_1
RsgI_N
Motif
Other DBs
NCBI-ProteinID:
QDQ95902
LinkDB
All DBs
Position
complement(5999123..6002629)
Genome browser
AA seq
1168 aa
AA seq
DB search
MLEGRILAVSSQTKAVSGIPGAPKRVSFAKIREPLEVPGLLDVQTDSFEWLIGAQSWRER
AAARGDSAISGGLEDILAELSPIEDFSGSMSLSFSDPRFDEVKASTDECKDKDMTYAAPL
FVTAEFINNNTGEIKSQTVFMGDFPMMTDKGTFIINGTERVVVSQLVRSPGVYFDHSVDK
GTEKDLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQPVTVLLKALGWTTEQITERFG
FSEILMATLEKDNTAGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKDKRYDLARVGR
YKINKKLGLNLGQPIVASTLTEEDIVATIEYLVRLHAGDTEMTAPGGSAVPVEVDDIDHF
GNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEFFGT
SQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIETPEGPN
IGLIGSLSVYARVNPFGFIETPYRKVENGQVTDQVDYLTADEEDRHVVAQANSALDANGH
FTDDRILVRRKGGEVEFVSSAEIDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQR
QAVPLVRSEAPLVGTGMELRAAVDAGDVIVTEKTGVVEEVSADYVTVMADDGSRKTYRMR
KFARSNQGTCANQRPIVDEGQRVEVGQVLADGPCTENGEMALGKNLLVAIMPWEGHNYED
AIILSQRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGIIRIG
AEVRDGDVLVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGETGKVIGIRVF
SRDDDDDLPPGVNELVRVYVAQKRKIQDGDKLAGRHGNKGVIGKILPQEDMPFLPDGTPV
DIILNTHGVPRRMNIGQILETHLGWIGKTGWNVQIAGDGSRPDWAEQLPEEMLSAPADSN
IATPVFDGAKEDELTGLLGSTLPNRDGEVMVASDGKATLFDGRSGEPFPYPVSVGYMYII
KLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTI
KSDDVVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIAMADGD
DEDLERAAANLGINLSRNEAATVDDLAN
NT seq
3507 nt
NT seq
+upstream
nt +downstream
nt
gtgctggaaggacgcatcttggcagtctctagccagaccaaggcagtttccggaatcccc
ggagccccgaagagggtttcgttcgcaaagattcgcgaacccctcgaagttcccgggctt
cttgatgtacaaaccgattcgttcgagtggttgatcggtgcgcagagctggcgcgaacgc
gccgccgctcgtggcgacagcgcaatctccggaggtctcgaggacattctcgcggagctt
tccccgatcgaggatttctcgggctcgatgtctctgtccttctcggacccgcgtttcgac
gaggtgaaggcctcgacggacgagtgcaaagacaaagacatgacctacgcggcgccgttg
ttcgtcaccgcggagttcatcaacaacaacaccggtgagatcaagagccagacggtcttc
atgggcgacttcccgatgatgaccgacaagggcacgttcatcatcaacggcaccgagcgt
gtcgtggtctcgcagctggtgcgttcccccggcgtctacttcgaccactccgtcgacaag
ggcaccgagaaggacctgcacagcgtcaaggtcatcccgggccgtggtgcatggctcgag
ttcgacgtggacaagcgcgacacggtcggcgtccgcatcgaccgcaagcgccgccagccc
gtcaccgtgctgctgaaggccctcggctggaccaccgagcagatcaccgagcgcttcggc
ttctcggagatcctcatggcgacgctcgagaaggacaacaccgccggcaccgacgaggcg
ctgctcgacatctaccgcaagctgcgtccgggcgagccgccgaccaaggagagcgcgcag
acgctcctggagaacctgttcttcaaggacaagcgctacgacctggctcgcgtgggtcgc
tacaagatcaacaagaagctgggcctgaatctcggacagccgatcgtcgcgtcgaccctc
accgaggaagacatcgtcgccaccatcgagtacctggtgcgcctgcacgccggtgacacc
gagatgacagcccccggcggcagtgcggtgcccgtcgaggtcgacgacatcgaccacttc
ggtaaccgtcgtctgcgcacggtcggcgagctcatccagaaccagatccgcgtgggcctg
tcccgcatggagcgcgtggttcgtgagcgcatgacgacccaggacgtcgaggccatcacg
ccgcagacgttgatcaacatccggcccgtcgtggctgcgatcaaggagttcttcggaacc
tcccagctgtcgcagttcatggaccagaacaacccgctgtcggggctgacgcacaagcgt
cgtctgtccgccctcggcccgggtggtctgtcccgtgagcgcgccggcctcgaggtgcga
gacgttcacccgtcgcactacggccgcatgtgcccgatcgagacccctgagggtccgaac
atcggtcttatcggttcgctgtcggtgtacgcacgggtcaacccgttcggcttcatcgag
acgccgtaccgcaaggtggagaacggccaggtcaccgaccaggtcgactacctgaccgcg
gacgaagaggaccgccacgtcgtcgcccaggccaactcggccctcgacgcgaacggtcac
ttcacggacgatcgcattctggtccgtcgtaagggtggcgaggtcgagttcgtctcgtcc
gccgagatcgactacatggacgtctcgccgcggcagatggtgtccgtcgcgaccgcgatg
attccgttcctcgagcacgacgacgccaaccgtgccctgatgggtgcgaacatgcagcgt
caggcggtgcccctcgttcgcagcgaggctccgctggtcggtacgggcatggaactgcgt
gccgccgtcgatgcgggcgacgtcatcgtcaccgagaagaccggtgtcgtggaagaggtc
tccgccgactacgtcacggtcatggccgacgacggcagccgcaagacctatcggatgcgc
aagttcgcgcgttcgaaccaaggcacctgcgccaaccagcgtccgatcgtggacgagggg
cagcgtgtcgaggtcggacaggtcctcgccgacggcccctgcaccgagaacggtgagatg
gcgctcggcaagaacctgctcgtcgcgatcatgccgtgggaaggccacaactacgaggac
gcgatcattctgtcgcagcgcctcgtggaagaggacgtcctgacctcgatccacatcgag
gagcacgagatcgatgcccgcgacaccaagctcggtgccgaggagatcactcgcgacatc
ccgaacgtctccgacgaggtcctcgccgacctcgacgagcgcggcatcatccgtatcggt
gccgaggttcgtgacggcgacgtgctggtcggaaaggtcacgccgaagggtgagaccgag
ctgacccccgaggagcgcctgctgcgcgccatcttcggtgagaaggcccgcgaggttcgc
gacacgtcgctgaaggttccccacggtgagaccggcaaggtcatcggcatccgcgtgttc
tcgcgcgacgacgacgacgatctcccccccggtgtcaacgagctggtccgcgtctacgtg
gcacagaagcgcaagatccaggacggcgacaagctcgccggccgccacggcaacaagggc
gtcatcggcaagatcctcccgcaggaggacatgccgttcctgcccgacggcactccggtc
gacatcattctgaacacccacggtgttccgcgtcgtatgaacatcggtcagatcttggag
acccacctcgggtggatcggcaagaccggctggaacgttcagatcgccggcgacggctcc
cgtcccgattgggcggagcagctgccggaggagatgctgtctgcacctgccgactccaac
atcgccaccccggtgttcgacggcgccaaggaagacgagctcaccggtctcctcggttcg
acgctgccgaaccgcgacggcgaggtcatggtcgcgtccgacggaaaggccacgttgttc
gacggccgttccggcgagccgttcccgtacccggtctcggtcggctacatgtacatcatc
aagctgcaccacctggtcgacgacaagatccacgctcgttcgaccggtccgtactcgatg
atcacccagcagccgctcggcggtaaggcccagttcggtggccagcgcttcggtgagatg
gagtgctgggcgatgcaggcctacggcgcggcatacacgctgcaggagctgctcaccatc
aagtcggacgacgtggtgggtcgagtcaaggtgtacgaggccatcgtcaagggcgagaac
atccccgagccgggtatccccgagtcgttcaaggtgctcctgaaggagctccagtcgctc
tgcctcaacgtggaggtgctgtcctcggacggcgcggccatcgcgatggccgacggtgac
gacgaggacctggagcgggccgcagcgaacctgggcatcaacttgtcccggaacgaagcg
gcgacggtcgacgacctcgcgaactag
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