Rathayibacter iranicus: C7V51_03090
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Entry
C7V51_03090 CDS
T05878
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
ria
Rathayibacter iranicus
Pathway
ria03030
DNA replication
ria03430
Mismatch repair
ria03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ria00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
C7V51_03090
03430 Mismatch repair
C7V51_03090
03440 Homologous recombination
C7V51_03090
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ria03032
]
C7V51_03090
03400 DNA repair and recombination proteins [BR:
ria03400
]
C7V51_03090
Enzymes [BR:
ria01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
C7V51_03090
DNA replication proteins [BR:
ria03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
C7V51_03090
DNA repair and recombination proteins [BR:
ria03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
C7V51_03090
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
Motif
Other DBs
NCBI-ProteinID:
AZZ54982
LinkDB
All DBs
Position
656558..660667
Genome browser
AA seq
1369 aa
AA seq
DB search
MVVGVVGGTVRGVRTDGADLDRSRGVDEPEERAGAVPTRRSCPPVRPARRAADRGGGRHR
HVGARRERPNPSGWGVRASAGQWAHRPFMTDAASPSRYVSLHTHSEHSELDSLAKISDLF
ARTAALGQPALAITDHGTLGGLWKAQNAADLHGVKLIPGIEAYLAIGDRFQHNQVELADG
ELADDSDDSADADDEAGGLDENGEPKPAKSRTKTKKYEHLTLLAVSETGWRNLVRINNAA
QKTKWGKYARIDYALVKQHAEGVVILSGCLGGPILGPLSRGDYSQAEANLLKMIATVGRE
NVYVEVMEHGIESESALLHLAVQLAQEHDIPLVATNDSHHTHAHDADAHDAWLAVSTKAL
VSDQKRYRFSGTGYHHRSEEEMLDLRPEAWWAEAVTNTMLVADRVDDRVLPRPAPKLPAF
PTPDGFSDNLHYYHHLVTQGAISRYGDLTLRPDVRARLNEELAIIRDAGFIDYFLIVHDI
VAWARANSILVGPGRGSGAGSITAYCLGITGLCPLENSLLFERFLEPGRPDFPDFDVDFE
ALRRADILDYLQRKWGSHCVALIGAFGSAKTKQALKSAARVLEAGSVGDKLAKVVPIAGG
NPFTFAQLEDLTLGEADPFRDQLAKLGEKGEEVVALARQFAGTVSGVSIHACGVIVSDLD
LTDLIPLRIDSKTGRWVSQWDSKDAEAFGLLKLDILSLRNLDIAHQAITFIYEQTGEQLD
FDRMPHPNTQGDPRVDAAFRTIREGRTSGLFQLESPKMTELAQDVGPTNLRDLSALVALF
RPGPLSAGMDQHYARRKNGREAVDYSIFTSDPNEQAVIASVLGETLGSLVFQEQLMSLGR
VMAGFDVDARGLLRRAVGKKDKVKMAKVGQMFIAGCVQDFRDPITGKITSPAMSERTALV
MWEAMKGSGEYLFNASHSAAYAQLAYITAYLKANWPAAYGAAILAVTEKPEKRQQALRSL
PEEGIEVLAPDVNRSGAHSRPEGPTSVRLGLKEIKGVGDSGERIARVREESGKPFTSLAD
VANRVRQGGSAADGSDSLKYLPTNHLEGLVEAGALDEFGPRMGQHATARIAKTGNDIVPP
PIEWGYLERSARQRQRLLVSLGTHPLIQLHDEVSAWRHHREAGGRSFHMRASAVEEVPNE
DGASVTVLGLLGRYAEKPYRGGQMAGLTIEGPRASVEAVMWNDTVEATKMAGTMPNIGGV
LAVSARVKIRVFESEDDEDNVVETTEHQLQVNQVYPVPVHDPVQGHLPPTDIPRIAFATV
PRPQASRTTAAKAPAPVPAQAQPAPEPSPLPVVDSSLRVLVARPYDGSTDIVRRNGLMPT
SKLAQRVLAFTGTQPTLNTWPSEHGTSFAVVDTDLITTLAVIEVAAETG
NT seq
4110 nt
NT seq
+upstream
nt +downstream
nt
atggtcgtcggtgtggtcggagggactgtgcgcggagtacgcacggacggagcagatctc
gaccgttcgcgtggggttgacgaacccgaagagcgggcgggcgcagtacctacgcggcgt
tcctgtcctcctgtccgccctgctcgacgagcagccgaccgcggcggaggccggcaccgt
cacgtaggtgctcgacgtgaacgccccaacccttctggttggggcgttcgcgcatctgcc
gggcagtgggcgcatagaccgttcatgaccgacgctgcctccccgtcacgctacgtgtcg
ttgcacacccactcggagcacagcgaactcgactccctcgcgaagatctcggacctgttc
gcgcggacggccgcgctcggccagccggcgctcgcgatcaccgaccacggcacgctcggc
ggtctgtggaaagcgcagaacgcggcggacctgcacggcgtgaagctcattcccggcatc
gaggcgtacctcgctatcggcgaccgtttccagcacaaccaggtcgaactcgccgacggc
gaactcgcggacgacagcgatgacagcgccgacgctgatgacgaggcggggggcctcgac
gagaacggggagccgaaaccggccaagtccaggaccaagaccaagaagtacgagcacctg
acgctcctcgccgtctccgagaccggctggcggaacctcgtccgcatcaacaacgcggca
cagaagacgaaatggggcaaatacgcccgcatcgactacgccctcgtgaagcagcacgcc
gaaggtgtcgtcatcctttccggctgtctcggggggccgatcctcggaccgctgtcccgc
ggtgactactcgcaggcggaggcgaatctgctcaagatgattgccaccgttggtcgcgag
aacgtgtacgtcgaggtgatggagcacggcatcgagtcggagtcggcccttctccacctt
gccgtgcagctcgcgcaggagcacgacatcccactcgtcgccacgaacgactcccaccac
acgcacgcccacgatgccgacgcccacgacgcctggctggccgtgtcgacgaaggcgctc
gtctccgaccagaagcgctaccgcttctccggcaccggctaccaccaccgcagcgaggag
gagatgctcgatctccgtcccgaggcatggtgggctgaggctgtcacgaacaccatgctg
gtcgccgaccgagtcgacgaccgggtcctcccgcgccccgcgccgaagctgccagcgttc
ccgacaccggacggcttctcggacaacctccactactaccatcacctcgtcacgcagggc
gcgatctcccggtacggcgacttgactctccggccggacgtgcgcgcgcgcttgaacgag
gagctcgcgatcatccgcgacgccgggttcatcgactacttcctcatcgtccatgacatc
gtcgcgtgggctcgcgcgaacagcatcctcgtaggtcccggccgcggttccggcgccggc
tccatcaccgcgtactgcctcggcatcacgggactgtgcccgctggagaacagccttctt
ttcgagcggttcctcgagcccgggcggccggacttcccggacttcgacgtcgacttcgag
gcgctccgccgcgcggacatcctggactacctgcagcgcaagtggggatcgcactgcgtg
gctctcatcggagctttcggatcggcgaagacgaagcaggcgttgaagtcggccgctcga
gtactcgaagcaggcagtgtcggcgacaagctcgcgaaggtggtacctatcgctggcggc
aacccgttcaccttcgcccagctcgaggacctcaccctcggcgaggccgacccgttccgg
gaccaactggccaagctgggggagaaaggtgaggaggtcgttgctctcgcccgccaattc
gccggcaccgtgtccggggtcagcatccacgcgtgcggcgtcatcgtctccgacctcgac
ctcaccgacctcatcccgctgcgcatcgacagcaagaccggccggtgggtctcccagtgg
gactcgaaagacgcggaagcgtttgggctcctgaagctcgacatcctgtcgctgcggaac
ctcgacatcgcccaccaggcgatcaccttcatctacgagcagaccggggagcagctcgac
ttcgaccggatgccgcacccgaacacgcagggcgaccctcgtgtcgacgcggcgttcagg
acgatccgggaaggacgaacctcaggcctgttccagctggagagcccgaagatgaccgag
ctcgctcaggacgtcggcccgaccaacctccgtgacctctccgctctcgtcgcgctcttt
cgccccgggcccctgtccgcaggcatggatcagcactacgcacgccggaagaacggccgt
gaagccgtcgactacagcatcttcacgagtgaccccaacgagcaggcggtgatcgcctcc
gtgctcggggaaacgttgggttctctcgtttttcaggagcagctcatgtctctggggcgc
gtgatggccggtttcgacgtcgatgcccgcgggctcctgcgccgcgccgtcggcaagaag
gacaaggtgaaaatggccaaggtcggccagatgttcatcgccggctgtgtgcaggacttc
cgcgacccgatcaccggaaagatcacgtcacctgcgatgagtgagcgcaccgccctcgtc
atgtgggaggcgatgaagggttccggcgagtacctcttcaacgcctcccactcggccgcg
tacgcgcaactcgcgtacatcaccgcctacctgaaggcgaactggccagccgcgtacgga
gccgcgatcctcgccgtgaccgagaagccggaaaagcgtcagcaggcgcttcggtccctg
cccgaggaaggcatcgaggttctcgccccggacgtcaaccgctccggcgcgcattcccgc
ccagaaggcccgacgagtgtgcggctggggctgaaagagatcaagggcgtcggcgacagc
ggagagcgcatcgcgcgcgtgcgcgaggagtccggcaagccgttcacctccctcgccgac
gtcgccaaccgtgtccgccagggcgggagcgccgccgacgggagcgacagcctgaagtac
ctgccgacgaaccacctcgaaggtctcgtcgaagcgggcgcgctagacgaattcggacct
cgcatgggtcagcacgcgaccgcgcgcatcgcaaagactggcaacgacatcgtgccaccg
cccatcgaatggggctacctcgaacgctccgcgagacagcgtcagcgcctgctcgtcagc
ctcggcacgcaccccctcatccagctgcacgacgaggtgtccgcgtggcgccaccaccgt
gaggcgggcggtcgatcgttccacatgcgcgcgtccgccgtcgaagaggtcccgaacgag
gacggcgcgtctgtcaccgtgctcgggctcctcggacggtacgcggaaaagccgtaccgc
ggcggtcagatggccggcctcaccatcgagggcccgcgagcgagcgtcgaagcggtcatg
tggaacgacacggtcgaggcgaccaagatggccggcacgatgcctaacatcggcggcgtc
ctcgccgtcagcgcgcgagtgaagatccgggtattcgagtcggaggacgacgaagacaac
gtcgtcgaaacgaccgagcatcagctgcaggtgaaccaggtgtatcccgtcccggtgcat
gacccggtgcagggtcacctcccgccgaccgacatcccgaggattgcgttcgccaccgtg
ccccggccgcaggcatcgcgcacgacggcggcgaaggcgcccgcacccgttccggcgcag
gcgcagcctgcgccggagccctccccattgcctgtcgtcgactcgagcctgcgcgtgctc
gtcgcccgcccttacgacgggagtaccgacatcgtccggcgcaacgggctgatgccgacg
tcgaagctcgcgcagcgggtgctcgcgttcaccggcactcagccgaccttgaacacctgg
ccgtcggagcacggcacctcgttcgccgtcgtcgacacggacctcatcacgacgttggcc
gtcatcgaggtggccgcggaaactgggtga
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