Rathayibacter iranicus: C7V51_09555
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Entry
C7V51_09555 CDS
T05878
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
ria
Rathayibacter iranicus
Pathway
ria03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ria00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
C7V51_09555 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ria03021
]
C7V51_09555 (rpoB)
03400 DNA repair and recombination proteins [BR:
ria03400
]
C7V51_09555 (rpoB)
Enzymes [BR:
ria01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
C7V51_09555 (rpoB)
Transcription machinery [BR:
ria03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
C7V51_09555 (rpoB)
DNA repair and recombination proteins [BR:
ria03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
C7V51_09555 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
AZZ56101
UniProt:
A0A5J6SG50
LinkDB
All DBs
Position
complement(2046238..2049729)
Genome browser
AA seq
1163 aa
AA seq
DB search
MAAASTATTTSPKNGRGASRLSFAKISDTLTVPDLLALQTESFDWLVGSEAWKTRVAEAK
AAGREDLPANSGLDEIFEEISPIEDLSETMQLSFTNPYLEPEKYTIGECKERGKTYAAPL
YVEAEFMNHLTGEIKTQTVFMGDFPLMTEKGTFIINGTERVVVSQLVRSPGVYFERQQEK
TSDKDIYSARVIPSRGAWLEFEIDKRDQVGVRIDRKRKQSVTVFLKALGLTSEEILEQFA
GYESIELTLEKDNILTKEDALRDIYRKLRPGEQVAAEAARALLDNFYFNSKRYDLAKVGR
YKINRKLGIDKALSDSVLTVEDIIATIKYLVALHDGRTTLPGVRDGGAVDLRLDVDDIDH
FGNRRIRAVGELIQNQVRTGLSRMERVVRERMTTQDIEAITPQTLINVRPVVAAIKEFFG
TSQLSQFMDQNNPLAGLTHKRRLSALGPGGLSRERAGVEVRDVHPSHYGRMCPIETPEGP
NIGLIGSLASFARINSFGFIETPYRKVVDGTVTSQIDYLTASEEDEYLVAQANAPLTADF
RFAEGKVLVRPKGGEVELVDADRVDYMDVSPRQMVSVATSLIPFLEHDDANRALMGANMQ
RQAVPLLRSESPVVGTGMEGFAAVDAGDVITADKAGVVQEVSADSVTVQLDEGGTQTYFL
RKFDRSNQGTSYNNRVVVSAGERIEVGEVVADGPATEKGELALGKNLLVAFMPWEGHNFE
DAIILSQNLVKDDVLSSIHIEEYEVDARDTKLGKEEITRDLPNVSPELLADLDERGIIRI
GAEVRPGDILVGKVTPKGETELSAEERLLRAIFNEKSREVRDTSLKVPHGERGTIIGVKV
FDAQDGDDELGSGVNQRVVVYIAQKRKITEGDKLAGRHGNKGVISKILPVEDMPFLVDGT
PVDIVLNPLGVPGRMNFGQVLEIHLGWIAKQGWKVEGQPEWAARLPEHAREAAPGTKVAT
PVFDGAAEEELAGLLDSTIPTRDGERLIGSSGKTQLFDGRSGEPYPDPVSVGYMYILKLH
HLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWALEAYGAAYALQELLTIKSD
DILGRVKVYEAIVKGENIQEPGIPESFKVLIKEMQSLCLNVEVLSADGTAVSLRDTDDEV
YRAAEELGINISSRFESSSVDDI
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
ttggctgctgcgtccaccgcgaccaccacctcacccaagaacggacgcggagcatcgcgt
ctttcgttcgccaagatcagcgacaccctgaccgttccggatctgctcgcgctgcagacc
gagagcttcgactggctcgtcggctcggaggcgtggaagacccgcgtggccgaggcgaaa
gccgcgggcagggaggaccttcctgccaactccggtctagacgagatcttcgaggagatc
tccccgatcgaggacctcagcgagacgatgcagctgagcttcacgaacccgtacctcgag
cccgagaagtacaccatcggagagtgcaaggagcgcggtaagacctatgccgccccgctc
tacgtcgaggctgagttcatgaaccacctcacgggtgagatcaagactcagacggtcttc
atgggcgacttccccctgatgaccgagaagggcacgttcatcatcaacggcaccgagcgt
gtcgtggtgtcccagctcgtgcgtagccccggtgtctacttcgagcgtcagcaggagaag
acgtccgataaggacatctactcggcccgagtcattccgagccgcggtgcctggctcgaa
ttcgagatcgacaagcgcgaccaggtcggcgtgcgtatcgaccgcaagcgcaagcagtcg
gtcaccgtgttcctcaaggctctgggcctgacgagcgaagagatcctcgagcagttcgcc
ggctacgagtcgatcgagctgaccctcgagaaggacaacatcctcaccaaggaggacgcg
ctccgcgacatctaccgcaagctgcgcccgggcgagcaggtcgccgccgaggccgcgcgt
gcgctgctcgataacttctacttcaattccaagcgctacgacctcgcaaaggtcggtcgc
tacaagatcaaccgcaagctcggcattgataaggcgctgtccgactcggtgctcacggtc
gaggacatcatcgcgaccatcaagtacctggtcgcgctgcacgacggccgtaccacgctc
cccggcgtgcgcgacggcggcgctgtcgacctgcgcctcgatgtggacgacatcgatcac
ttcggcaaccgccgcatccgcgcggtcggcgaactgatccagaaccaggtccgtaccggc
ctatcccgcatggagcgtgtcgtccgcgagcgcatgaccacgcaggacattgaggcgatc
accccgcagaccctgatcaacgttcgccccgtcgtggctgcgatcaaggagttcttcggg
acgagccagctctcgcagttcatggaccagaacaacccgctcgcgggcctgacccacaag
cgccgcctgtcggcgctgggccccggtggtctctcccgtgagcgcgccggcgtcgaggtc
cgcgacgtccacccgtcgcactacggccggatgtgccccatcgagactcccgaaggtccg
aacatcggcctgatcggttcgctcgcctccttcgcgcggatcaattcgttcggcttcatc
gagaccccgtaccgcaaggtcgtcgacggcaccgttacctcgcagatcgactacctcacg
gcgtcggaggaggacgagtacctggttgcccaggcgaatgctcccctcaccgccgatttc
cgcttcgccgagggcaaggtcctggttcgtccgaagggcggagaggtcgagctcgtcgat
gccgaccgcgtcgactatatggatgtctccccgcgccagatggtgtcggtcgcgacctcc
ctgatcccgttcctcgagcacgacgacgcgaaccgcgcgctgatgggcgccaacatgcag
cgtcaggccgtcccgctgctgcgcagcgagtcgcccgtggtcggtaccggcatggagggc
tttgcggccgtcgacgccggcgacgtgattaccgccgacaaggcgggtgttgtccaggag
gtctccgccgactccgtcactgtccagctggacgagggcggcacgcagacctacttcctc
cgcaagttcgaccgctccaaccagggcacctcgtacaacaaccgcgtggtcgtgtcggcc
ggtgagcgcatcgaggtcggcgaggtcgtcgccgacggtcccgccaccgagaagggcgag
ctcgcactcggtaagaacctgctggtcgcgttcatgccgtgggagggccacaacttcgag
gatgcgatcatcctcagccagaacctggtgaaggatgacgtcctctcctcgatccacatc
gaggagtacgaggtcgacgcccgcgacaccaagctgggcaaggaggagatcacccgcgac
ctcccgaacgtcagccccgaactcctcgccgatctggacgagcgcggcatcatccgcatt
ggagccgaggttcgccccggcgacatcctcgtcggcaaggtcacgccgaagggcgagacc
gaactctccgctgaggagcgcctgctccgcgccatcttcaatgagaagagccgcgaggtc
cgtgacacgtcgctgaaggtgccgcacggcgagcggggcacgatcatcggcgtcaaggtg
ttcgacgcacaggacggcgacgacgaactcggttcgggcgtcaaccagcgcgtggtcgtc
tacatcgcccagaagcgcaagatcaccgagggcgacaagctcgccggccgccacggcaac
aagggcgtcatctcgaagatcctgccggtcgaggacatgcccttcctggtcgacggcact
ccggtcgacatcgtcctcaatccgctcggcgtccccggtcggatgaacttcggccaggtc
ctcgagatccacctcggctggattgcgaagcaggggtggaaggtcgagggtcagccggag
tgggctgcgcgcctgcccgagcacgcccgcgaggcggcgcccggtaccaaggtcgcgact
cccgtcttcgacggtgcggcggaggaagaactcgccggcctcctcgactcgaccatcccc
acgcgggatggcgagcgcttgatcggttcgtccggcaagacgcagctgttcgacggccgc
tcgggcgagccctacccggacccggtctcggttggctacatgtacatcttgaagctgcac
caccttgtcgacgacaagatccacgcgcgctcgacaggcccgtactcgatgatcactcag
cagccgctcggtggtaaggcgcagttcggtggtcagcgcttcggcgagatggaggtgtgg
gcccttgaggcctacggcgctgcatacgccctccaggaactcctcaccatcaagtcggat
gacattctcggccgcgtgaaggtgtacgaggccatcgtcaagggtgagaacatccaggag
ccgggcattccggagtccttcaaggtcctcatcaaggagatgcagtcgctctgcctgaac
gtcgaggtcctgtctgccgacggcaccgcggtcagcctgcgcgacaccgacgacgaggtc
taccgcgccgcggaagagctcgggatcaacatctcctcccggttcgagtcgtcctccgtc
gacgacatctga
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