Rhizophagus irregularis: OCT59_005218
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Entry
OCT59_005218 CDS
T10295
Name
(RefSeq) uncharacterized protein
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
rie Rhizophagus irregularis
Pathway
rie03018
RNA degradation
rie03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rie00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
OCT59_005218
09123 Folding, sorting and degradation
03018 RNA degradation
OCT59_005218
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rie03019
]
OCT59_005218
03041 Spliceosome [BR:
rie03041
]
OCT59_005218
Messenger RNA biogenesis [BR:
rie03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
OCT59_005218
mRNA degradation factors
5'-3' decay
Lsm complex
OCT59_005218
Spliceosome [BR:
rie03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
OCT59_005218
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
36870046
NCBI-ProteinID:
XP_065997391
LinkDB
All DBs
Position
13:complement(2911102..2912553)
Genome browser
AA seq
131 aa
AA seq
DB search
MLPLSLLNTAQGHPMLVELKNGETFNGHLVNCDNWMNLTLREVIQTSPEGDRFWRLPECY
IRGNTIKYLRVPDEIMEMVKEDTLRQRPGPSSGNRGRGSRGGNTGGSRAGSSSGRGGGSG
GGGGRGKSKNR
NT seq
396 nt
NT seq
+upstream
nt +downstream
nt
atgctgccactttctttgttaaacacagctcaaggacaccctatgttggtagaattaaaa
aacggggaaacatttaatggtcatttagtaaattgtgacaattggatgaatttaacttta
cgtgaagttatacaaacctctccggaaggagataggttttggcgattacctgaatgctat
atcagagggaatacgattaaatatttgcgtgtaccagatgagatcatggaaatggtaaag
gaggatactttacgacaaagaccagggccaagcagtggaaatcgaggacgtggttctcgt
ggtggaaatactggaggaagcagagccggaagctctagtggccgtggaggaggtagtggt
ggcggtggcgggagaggaaaatccaagaaccgataa
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