KEGG   Rhizophagus irregularis: OCT59_005218
Entry
OCT59_005218      CDS       T10295                                 
Name
(RefSeq) uncharacterized protein
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
rie  Rhizophagus irregularis
Pathway
rie03018  RNA degradation
rie03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:rie00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    OCT59_005218
  09123 Folding, sorting and degradation
   03018 RNA degradation
    OCT59_005218
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rie03019]
    OCT59_005218
   03041 Spliceosome [BR:rie03041]
    OCT59_005218
Messenger RNA biogenesis [BR:rie03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     OCT59_005218
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     OCT59_005218
Spliceosome [BR:rie03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    OCT59_005218
SSDB
Motif
Pfam: LSM SM-ATX
Other DBs
NCBI-GeneID: 36870046
NCBI-ProteinID: XP_065997391
LinkDB
Position
13:complement(2911102..2912553)
AA seq 131 aa
MLPLSLLNTAQGHPMLVELKNGETFNGHLVNCDNWMNLTLREVIQTSPEGDRFWRLPECY
IRGNTIKYLRVPDEIMEMVKEDTLRQRPGPSSGNRGRGSRGGNTGGSRAGSSSGRGGGSG
GGGGRGKSKNR
NT seq 396 nt   +upstreamnt  +downstreamnt
atgctgccactttctttgttaaacacagctcaaggacaccctatgttggtagaattaaaa
aacggggaaacatttaatggtcatttagtaaattgtgacaattggatgaatttaacttta
cgtgaagttatacaaacctctccggaaggagataggttttggcgattacctgaatgctat
atcagagggaatacgattaaatatttgcgtgtaccagatgagatcatggaaatggtaaag
gaggatactttacgacaaagaccagggccaagcagtggaaatcgaggacgtggttctcgt
ggtggaaatactggaggaagcagagccggaagctctagtggccgtggaggaggtagtggt
ggcggtggcgggagaggaaaatccaagaaccgataa

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