Rhizophagus irregularis: OCT59_018841
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Entry
OCT59_018841 CDS
T10295
Name
(RefSeq) NineTeen Complex (NTC) component
KO
K12869
crooked neck
Organism
rie Rhizophagus irregularis
Pathway
rie03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rie00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
OCT59_018841
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rie03041
]
OCT59_018841
03036 Chromosome and associated proteins [BR:
rie03036
]
OCT59_018841
Spliceosome [BR:
rie03041
]
Complex B
Other components
Prp19-related factors
OCT59_018841
Complex C
OCT59_018841
Chromosome and associated proteins [BR:
rie03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Other centrosome duplication proteins
OCT59_018841
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
HAT_PRP39_N
HAT_PRP39_C
HAT
TPR_14
Suf
TPR_19
TPR_17
TPR_16
TPR_CcmH_CycH
ARM_TT21_5th
BSD
U3_assoc_6
Motif
Other DBs
NCBI-GeneID:
36878757
NCBI-ProteinID:
XP_025166570
LinkDB
All DBs
Position
28:complement(838204..841457)
Genome browser
AA seq
683 aa
AA seq
DB search
MDPSQVPNLYKQQRGPPKIKNKNPAPIQITAEQILREAKERQESAKKAPRQKISDLEELS
EYRLRKRKEFEDAIRRNRLNIGSWLKYAAWEESQKELNRARSIYERALDVDSRNVTLFIK
YTEMEMKNRNINHARNLFDRAVTLLPRVDQFWYKYTYMEEMLGNVAGARQIFERWMQWEP
DESAWNAYIKMEKRYKEIDRARAIYERFVNVHPEPKNWLKWVKFEEEQNNLEKCREILSQ
AIEVLGEDHMDQKIFIAFAKFETRLKEFERARIIYKYALDKLPRSKSESLYNAYTQFEKQ
HGDKDEIEDVVVGKRRLQYDEELAANPKNYDIWFDYARLEENASDIEKVREIYERAIAQV
PPTQEKRFWRRYIYLWINYALYEELETKDYDRTRQIYQECLKILPHKKFTFAKIWLLYAQ
FEIRRLDLQAARKSLGMAIGMCPKDRLFKGYIEIELQLREFDRCRTLYTKYLEHNPSNCY
AWIKFAELERMLGDYDRCRAIFELAVEQPTLDMPELLWKAYIDFEFTEEEFEKTRLLYQR
LLEKTGHVKVWISFAQFELNADEGDKQGALERARKVFENAYQSMKEKELKEERVLLLESW
KEFETNHGNQETLSTVEAKMPKVVKKRRKLEETEGQTGVAWEEYFDYIFPDDQTQQPNFK
LLAMAHAWRQQQQQQQQNQEIQE
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atggatccatcacaagtaccaaatctttataaacaacagcgaggtcctccaaagatcaaa
aacaaaaatcctgcgccgattcaaattacagctgaacaaattcttcgtgaagccaaagag
agacaagaatctgcgaagaaagcacctcgtcaaaagatttccgacttagaagaattgtca
gaatatcgtttacgtaaaaggaaagaatttgaagatgctataagaagaaatagattaaat
atcggaagttggttgaaatatgcagcatgggaagaaagtcaaaaagaattaaatagagcg
cgttcgatatatgaaagggcattggatgtggattcgcgcaacgttaccctttttattaaa
tatactgaaatggaaatgaagaatcgcaatatcaatcatgctagaaatttgtttgatcgc
gctgttactttattaccacgagtggaccaattttggtacaaatatacttatatggaagaa
atgttgggaaatgttgcaggagcacgtcaaatatttgaacgttggatgcagtgggaaccg
gatgaatcagcgtggaatgcttatataaaaatggaaaaaagatacaaagaaattgataga
gcaagagcaatttatgagaggttcgttaatgtacatccagaaccaaagaattggctgaaa
tgggttaaatttgaagaggagcagaataatttggagaagtgtcgagagattcttagtcaa
gccattgaagtactaggtgaagatcatatggaccaaaagatattcatagcatttgcaaaa
tttgaaactaggttgaaagagtttgaaagagcacgtattatttataaatatgcgttggac
aagctacctagatccaaatctgaatcactatataacgcgtacactcaatttgaaaaacaa
catggtgacaaagatgaaattgaagacgtggtggttggaaagcgaaggttgcaatatgac
gaggaattagcagcaaacccaaagaattatgacatatggtttgattacgcgagattagag
gaaaatgcgagcgatattgaaaaagttcgtgaaatttacgaacgtgccattgcacaagta
cctccgacacaagagaaacggttctggaggcgatatatatatttatggataaattatgcg
ttatacgaagagcttgaaaccaaagattatgataggacgcgccaaatttatcaagaatgt
ttgaagatattacctcacaagaaatttacatttgcaaagatatggttactatatgcacaa
tttgaaatacggcgtttggacttgcaagcggcaagaaagagtttgggaatggcaataggg
atgtgtccaaaagatagattgtttaaaggatatattgaaatcgaattgcagctacgagaa
ttcgatcgttgtcgtactctatatactaaatatttggaacataatccatccaattgttat
gcatggattaagttcgcggagctagaaagaatgttaggtgactatgacagatgtcgggca
atattcgaattggctgtagaacagcccactttagatatgccagagttattatggaaagcg
tatattgattttgaatttacagaagaggaattcgaaaagacgcgtcttttgtatcaacgt
ttattggaaaagactggtcatgttaaagtttggatcagttttgcgcaatttgaactaaat
gctgatgaaggagacaagcaaggtgcattggaaagagcgcgcaaagtatttgagaatgct
tatcaaagcatgaaagaaaaagaattgaaagaggagcgcgttttgcttcttgaatcatgg
aaagaatttgaaacaaaccatggcaatcaggaaacactttctaccgttgaagctaaaatg
cctaaagtcgttaagaaacgacgtaaacttgaggaaactgagggacagacaggtgttgct
tgggaagaatattttgattacatatttcctgacgatcaaactcaacaacctaatttcaaa
ttattggcaatggcgcatgcttggaggcaacagcaacaacagcaacagcaaaatcaagag
attcaagagtag
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integrated database retrieval system
