Rhizophagus irregularis: OCT59_019756
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Entry
OCT59_019756 CDS
T10295
Name
(RefSeq) uncharacterized protein
KO
K12821
pre-mRNA-processing factor 40
Organism
rie Rhizophagus irregularis
Pathway
rie03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rie00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
OCT59_019756
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rie03041
]
OCT59_019756
Spliceosome [BR:
rie03041
]
Complex A
U1 snRNP components
U1 related factors
OCT59_019756
Complex B
OCT59_019756
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
WW_2
Ku_PK_bind
BcrAD_BadFG
Motif
Other DBs
NCBI-GeneID:
36869577
NCBI-ProteinID:
XP_025174223
LinkDB
All DBs
Position
29:complement(1899362..1903971)
Genome browser
AA seq
762 aa
AA seq
DB search
MSWNPPPGAPSQFGQPRPNIYPPQRPGYQASPYAPRPVQNQPFVPGQAPFAPQPMQIWTE
HTSPDGRKYYFNSITKQSSWDKPDELKTSEELALGSCAWKEFTAEGGRKYYYNSITNESK
WEIPPEYKEFLEKLERDKKPSHIETSHQSNGSIVSPNQQDIERARQLSVPSVSPVNVTPV
NVPIRPMGVAAPVVSPNIPIPIQQPKLPKIEFETKEDAEAAYRELLKESGVKTDWTWEQT
MRAIIAKPMYRALKTLVERKQAFQDYVDDLRKKEEEEKRAKAIKIRLDFISLLETHPEVN
SSTRYRKVCEVLSEKTAFKAVEDDRLREEIFSEYIYDLRKQEKEVQRAIRKENMEKFNQL
LKSLPSITETTRWVDAQQIYANTPEYQQDKTLREMDMLDFLAVYEEHIKILERETADKKK
RELEEQTRQQRRNRDAYRTLMNELRQKNVINAKSKWKEIYPLIHTDEQYQNMLGQPGSNP
LELFWDVVEELDEILYQQRKIVTEIMKTKDVTINSGMSFEQFQVACSSDDRISSVNETNL
RIIFEQLQRKQERRQRRKLDAFKTILKHFEANITPDATWEKVRPIIEKTEEFQAIESEEQ
RIEVFNKFIERIKEKILKKGDDSEEEEGTLKDDDLDDDRHVSGERKKKHKSSHRSYHHRR
SHHYSDYSAESGDYSDREKDSSDKRKRRKQKSKIETRYAESRVHHDYKIHSPKQETVYKN
ISPKSEEILKSQSPKNDESQIEVIKHDDSSAEEGDYKQILEV
NT seq
2289 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtggaatcctcccccaggtgctccctcacaatttgggcaaccaaggccaaacatt
tatccaccgcaaagacccggctatcaagcttctccatatgctccacgtccagttcaaaat
cagccctttgtacctggacaagctccttttgcacctcagcccatgcaaatttggacagaa
catacttcacctgacggacgtaaatattatttcaattcaattactaaacaaagtagttgg
gacaaacctgatgaattaaaaacttccgaagagttagcactaggttcttgtgcttggaaa
gaattcacagcagaaggtggtcgcaaatattattataattctatcacaaatgaatctaaa
tgggaaattccgcctgaatataaagaatttctcgaaaagttggaaagagataaaaagcca
tcgcatattgaaacttcacatcaatcaaatggctcaattgtttcaccaaatcaacaagat
atagagcgcgctagacaactgagtgttccttctgttagtcctgttaatgttactcctgta
aatgtacctataagaccaatgggagtagctgctcctgtggttagtcctaatatacccata
ccaattcaacaacctaaacttccaaaaattgaatttgagactaaagaggatgctgaggca
gcttatcgagaattgcttaaagaatccggtgttaaaacagattggacttgggaacaaacc
atgagagcaataatagcaaaacctatgtatcgtgcacttaaaacattagtagaacggaaa
caagcttttcaagattatgtagatgacctcagaaaaaaggaagaagaagaaaaaagagcg
aaagccattaaaattcggctagattttatttccctacttgaaacgcatccagaagttaat
tcttctactcgttatcgaaaagtgtgtgaagttctgagtgaaaagacggcatttaaagct
gttgaggatgatcgattacgcgaagaaattttcagtgaatatatttatgatcttcggaaa
caagaaaaggaagtacaaagagctattcgtaaagagaatatggaaaagtttaatcaactt
ctaaaatcacttccgagtattacagaaactacacgatgggtggatgctcaacaaatatat
gctaatactcctgaatatcagcaagataaaacccttcgagaaatggatatgttagatttt
ttggctgtatatgaggagcatattaaaattttagaacgtgaaacagctgataagaaaaaa
cgagaacttgaagagcaaactagacaacagcgaagaaatagggatgcatatagaactttg
atgaacgaattgcggcagaaaaatgtgataaatgctaaatcgaaatggaaagaaatatat
ccattaattcatactgatgagcagtatcaaaatatgcttgggcaacctggatcaaatcct
cttgaattattttgggatgtagtcgaagaacttgatgaaatattatatcagcaacgtaaa
attgttactgaaattatgaagacaaaagatgtcactataaattctggaatgtcatttgaa
caatttcaagtcgcatgtagttcagatgatcgtatttcttcagtaaatgaaaccaatcta
aggataatctttgaacagttacaaagaaaacaagaaagaagacaacgtagaaaattagat
gcatttaaaacaattcttaagcattttgaagcaaatatcacgcctgatgctacttgggag
aaggtacgaccaataattgagaaaaccgaagaatttcaagcaatagaatctgaggagcaa
cgtattgaagtttttaataaatttatcgaacggatcaaggaaaagattctgaaaaaaggg
gatgatagtgaagaagaagaaggtactcttaaagatgatgatcttgatgatgatcgacat
gtgtctggcgaacgtaaaaaaaagcataagagtagtcatcgatcctatcatcaccgaaga
tcccatcattactctgattattcggctgagagtggtgattattcagatagagaaaaggat
agtagtgataaacgtaaacgacgaaagcaaaaatccaaaattgaaacaagatatgcagaa
tctagagttcaccatgattataaaattcattcccctaaacaagaaactgtttataaaaat
atatcacctaaatcagaagaaatattaaaatctcaatcgcccaaaaatgatgaatctcaa
atagaagtcatcaaacatgatgattcaagcgcggaagaaggcgattataagcaaattctt
gaagtatga
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