KEGG   Rhizobium indicum: FFM53_028825
Entry
FFM53_028825      CDS       T07009                                 
Name
(GenBank) Ku protein
  KO
K10979  DNA end-binding protein Ku
Organism
rii  Rhizobium indicum
Pathway
rii03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:rii00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    FFM53_028825
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rii03400]
    FFM53_028825
DNA repair and recombination proteins [BR:rii03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     FFM53_028825
SSDB
Motif
Pfam: Ku
Other DBs
NCBI-ProteinID: QKK20405
LinkDB
Position
pPR12A201:952341..953249
AA seq 302 aa
MPSGQRAQWKGFLKFGEVSCGVALYTAASTSDRITFNTINKATGNRVNRIFIDSETEDPV
PKEAQTKGFEIENGQYIIIDPEEVSAAIPESNKTLEIEAFIPCSDVDDVYFDKPYYLTPD
KMGGDAFAALRDAMKKSMVAAIARTVLFRRMRTVLIRPHGKGLIASTLNYDYEVRSSEKA
FEEMPKLKIQGEMLDLAKHIISTKKGEFDPATFDDRYEAAVADLVKAKLEGKSLPKPKKV
QVSKPNDLLAALRESAGMMKAADDKPKRTAANANQGTGRQRAARGAASKAASSGAAPRRK
AS
NT seq 909 nt   +upstreamnt  +downstreamnt
atgccgtcaggacagcgtgcgcagtggaaaggctttctgaagttcggtgaggtaagctgc
ggcgtcgctctctacacggcagcctcgaccagcgaccgcatcaccttcaacaccatcaac
aaggccacgggcaaccgcgtcaaccgcatcttcatagacagcgagaccgaggatccggtg
ccgaaggaagcccagaccaagggcttcgagatcgagaacggccagtacatcatcatcgat
cccgaggaagtttccgccgcgatccctgagagcaacaagacgctcgagatcgaggcgttc
atcccctgctccgacgtcgacgacgtctatttcgacaagccgtactacctcacgcccgac
aagatgggcggagacgcgttcgcggctctccgcgatgcgatgaagaagtcgatggtcgcg
gccatcgcccgcaccgtcctattccgtcgaatgcgtacggtgctgatacggccgcacggc
aagggcctgatcgccagcacgctcaactacgactacgaggttcgttcctccgaaaaggct
ttcgaggagatgcccaagctcaagatccagggcgagatgctcgatctcgccaagcacatc
atcagcaccaagaagggcgagttcgatccggcgaccttcgacgaccgctacgaagccgcc
gtcgcggatctggtgaaggcgaagctggaaggcaagtcgcttccgaagccgaagaaggtg
caggtctcgaagcccaacgatctgctggccgcgctccgagagagtgctgggatgatgaag
gccgctgacgacaaaccgaaacgcactgcggccaatgccaatcaaggcactggcaggcag
cgcgccgcgcgcggagcggcttcgaaagccgcctcttccggtgccgctccgcggcgcaag
gccagctag

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