Roseburia intestinalis M50/1: ROI_20750
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Entry
ROI_20750 CDS
T02598
Name
(GenBank) Superfamily I DNA and RNA helicases
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
rim
Roseburia intestinalis M50/1
Pathway
rim03420
Nucleotide excision repair
rim03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rim00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ROI_20750
03430 Mismatch repair
ROI_20750
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rim03400
]
ROI_20750
Enzymes [BR:
rim01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ROI_20750
DNA repair and recombination proteins [BR:
rim03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ROI_20750
MMR (mismatch excision repair)
Other MMR factors
ROI_20750
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
Viral_helicase1
AAA_30
AAA_11
DEAD
AAA_14
ResIII
DUF2073
ChitinaseA_N
Motif
Other DBs
NCBI-ProteinID:
CBL09103
UniProt:
D4KQF1
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All DBs
Position
2092664..2094505
Genome browser
AA seq
613 aa
AA seq
DB search
MSFNASQTRAIHHKNGPMLVLAGPGSGKTLVITERTKYLIEACGIDPAQILVITFTKAAA
TEMKRRFQRKMNRSCPVTFGTFHAVYFAILKHAYNYSADNIAREEQRYQCMREIIAKEHL
TYEDETEFITSLLGEISLVKNSGIEIANYYSKNCAETVFRKVYRQYHEFLYKNRLIDFDD
MLVYTKELFEQRADILAAWQNKYRYILIDEFQDINRIQYDIIKMLAGERKNLFIVGDDDQ
SIYRFRGAKPEIMLHFKDDYPEAETVLLDVNYRSVKNIVTSAGYLIGHNKERFQKKIEAA
DQGDIPVEWQLFESQRKENARIIWDIQEAVEKGAKYEEFAVLFRTNTQPRLLMEQLMEYN
IPFRTRDTVPNLYEHWIAKDIFAYIRIAMGSRERRDFLQIMNRPKRYISRESLDEETVAF
DVWEWYYEEQPWVAKRIEKLESDIRMLERLSPYAAINYIRKAIGYDEFCTEYADYRRIKA
DDLFDVLDELLDAAREYKTYDAWFDHIENYTKELQEFYRVQNQNPNSVALATLHSAKGLE
YENVYIIDVNEGVMPYKKAVLEPEVEEERRMFYVGMTRAKKNLHLFSVRQLNHKDAEISR
FIKEAQPPEKKKD
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atgagctttaacgcatcacagacacgggcaatccatcacaaaaacggaccgatgctcgtt
cttgccggaccgggttccggaaaaacccttgtaatcacagaacgtacaaaatatctgatc
gaagcgtgtgggatagatccggcacagatccttgttatcacatttaccaaagccgctgca
acggagatgaagcgaagatttcagcggaaaatgaaccggtcatgtccggtgacatttggc
acgtttcatgcagtatattttgctattttaaaacatgcatataattacagcgcagacaat
attgccagggaggaacagcgctaccagtgtatgcgtgagatcatagcgaaagaacatctg
acctatgaggatgagacggagtttatcacatctctgttaggggagatcagtctggtcaaa
aattccgggatagaaatcgccaactattattcgaaaaactgtgcggagaccgtgttccga
aaggtttatcgccaatatcatgaatttttgtacaaaaacagactgattgattttgatgac
atgttagtatacacgaaggaactttttgaacagcgtgccgatatccttgccgcatggcag
aataaataccgctatattttgatcgatgagtttcaggacatcaaccggatccagtatgac
attataaaaatgttagcgggtgagcggaaaaatctgtttatcgtgggggatgatgaccag
tcgatctaccgtttccggggcgcgaagccggagatcatgttacattttaaagatgattat
ccggaggcggagacggttcttttagatgtgaattaccgttccgtaaaaaacattgtgaca
agtgccggatatctcatcggccacaataaggaacgctttcagaaaaaaatagaggcggcg
gatcagggggatatcccggttgaatggcagttgtttgaaagccagcgcaaagaaaatgca
agaatcatctgggatattcaggaggcggtggagaaaggcgcaaaatatgaagaatttgca
gtgcttttccgcaccaatacacagccgagacttctgatggaacagctgatggagtataat
attccattccgaacgagagataccgtgccgaacttatacgagcactggatcgcaaaagat
atttttgcatacataaggattgcgatgggaagcagggaacgcagggatttcctgcagatc
atgaaccgtccgaaacgctatatcagccgggaatcgctagacgaggagaccgtggcattt
gatgtgtgggagtggtactatgaggaacagccgtgggtggcaaagcgcatcgaaaaatta
gagagcgatatccgtatgttagagagattaagtccgtatgcggcgatcaattacatccgg
aaggcaatcggatatgatgagttttgtacagaatatgcggattacagacgtatcaaagcg
gatgatctgtttgatgttttggatgagctcctggatgcagcgagggaatataagacttat
gatgcgtggtttgaccacattgaaaattacacaaaagagctgcaggaattttaccgcgtg
cagaatcagaacccgaacagtgttgcgttagcaacattacatagtgcaaaaggtctggaa
tatgaaaatgtctatatcattgacgtcaatgagggtgtcatgccatacaaaaaagcagtg
ctggaaccggaagtggaagaagagcgaaggatgttttatgtaggaatgacgagagcaaaa
aaaaatctgcatcttttttcagtcagacaactgaaccataaagatgcagaaatttcccgt
tttatcaaagaagcgcagccaccggaaaagaagaaggattaa
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