Roseburia intestinalis XB6B4: RO1_02610
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Entry
RO1_02610 CDS
T02597
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
rix
Roseburia intestinalis XB6B4
Pathway
rix03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rix00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
RO1_02610
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rix03021
]
RO1_02610
03400 DNA repair and recombination proteins [BR:
rix03400
]
RO1_02610
Enzymes [BR:
rix01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
RO1_02610
Transcription machinery [BR:
rix03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
RO1_02610
DNA repair and recombination proteins [BR:
rix03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
RO1_02610
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
DUF5887
Motif
Other DBs
NCBI-ProteinID:
CBL11064
UniProt:
D4KUM4
LinkDB
All DBs
Position
complement(234057..237953)
Genome browser
AA seq
1298 aa
AA seq
DB search
MEKNRIRPVKAGKGMRMSYSRQKEVLEMPNLIEVQKDSYQWFLKEGLKEVFDDISPIADY
SGHLSLEFVDFTLCESDVKYTIPECKERDATYAAPLKVKVRLHNKETDEINEHEIFMGDL
PLMTETGTFVINGAERVIVSQLVRSPGIYYGIAHDKVGKKLYSCTVIPNRGAWLEYETDS
NDVFYVRVDRTRKVPITVLIRALGIGTNQEIVDLFGEEPKILASFGKDVATNYEEGLLEL
YKKIRPGEPLTVESAESLISAMFFDPRRYDLAKVGRYKFNKKLMLKNRINGHVLAEDVVN
LATGEIIAEAGTEVTRSLADDIQNAAVPYVWIQTETRNVKVLSSMMVDLRAYVDCNPKDL
GITELVYYPVLAQLMEEHTDIDDLKEAIKKNVHDLIPKHITKDDIFASINYNMHLEYGIG
NDDDIDHLGNRRIRAVGELLQNQYRIGLSRLERVVRERMTTLDLDGISPQSLINIKPVTA
AVKEFFGSSQLSQFMDQNNPLGELTHKRRLSALGPGGLSRDRAGFEVRDVHYSHYGRMCP
IETPEGPNIGLINSLASYARINEYGFVEAPYRKIDKSDPKNPRVTDEVVYMTADEEDNYH
VAQANEALDAEGHFVRNSVSGRYREETQEYEKTMFDYMDVSPKMVFSVATALIPFLQNDD
ANRALMGSNMQRQAVPLLTTDAPVVGTGMETKAAVDSGVCVIAKKSGIVESSESNQIIIK
SDEGTRDVYKLTKFSRSNQSNCYNQRPIVFKGDRVEAGEVIADGPSTSNGELALGKNPLI
GFMTWEGYNYEDAVLLSERLVQDDVYTSIHIEEYEAEARDTKLGPEEITRDVPGVGDDAL
KDLDERGIIRIGAEVRAGDILVGKVTPKGETELTAEERLLRAIFGEKAREVRDTSLKVPH
GEYGIVVDAKVFTRENGDELSPGVNQAVRIYIAQKRKISVGDKMAGRHGNKGVVSRVLPV
EDMPFLPNGRPLDIVLNPLGVPSRMNIGQVLEIHLSLAAKALGFNIETPVFDGAKEIDIQ
DTLELANDYVNMPFDAAEAEKEGKTESFEEKYKDILREDVMKYLSDNRAHRALWKGVPIS
RDGKVQLRDGRTGEPFDSPVTIGHMHYLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQF
GGQRFGEMEVWALEAYGASYTLQEILTVKSDDVVGRVKTYEAIIKGDNIPEPGIPESFKV
LLKELQSLGLDVKVLDEDRNEVELMETSEYGNTDLNSIISGDKDFAFEDSDSFAKMGFSQ
KEFNAENEELVDVDEEPEEDEDDSDFFDDAEENTLDEE
NT seq
3897 nt
NT seq
+upstream
nt +downstream
nt
atggagaaaaacagaatacgaccagtcaaagccggtaaaggcatgcgtatgagttactca
agacagaaagaggtattggaaatgccgaatctgatagaggtccagaaagactcctatcag
tggtttttaaaagaaggcttaaaagaagttttcgacgatatctccccgatcgcagattac
agcggtcacttgagtctggaatttgttgattttacattatgtgaatcagatgtaaaatat
acaattccggagtgcaaagagagagatgcaacttacgcagcacctttaaaggtaaaggta
agacttcacaacaaagaaacagatgagattaatgaacatgagattttcatgggtgatctt
cctttgatgaccgagacaggtactttcgtgatcaacggagccgagcgtgttattgtcagc
cagttggtacgttctccgggtatctattacggcattgctcacgataaagtgggtaaaaag
ctgtattcctgtaccgtgattccaaaccgtggtgcatggttagagtatgagacagactcc
aatgacgtattctatgttcgtgttgatagaacgagaaaagtgccgattacagtattgatc
cgtgcacttggtatcggtaccaatcaggaaatcgtcgatctgttcggcgaggaaccgaag
atccttgcaagttttggaaaagacgttgcaacgaattatgaagaaggtcttcttgagtta
tataagaaaatcagaccaggcgagccgcttactgttgaaagtgcggagagccttatttct
gctatgttctttgatccgagaagatatgaccttgcaaaagtaggccgttacaaatttaat
aagaaacttatgttaaagaaccgtatcaacggacatgttctcgcagaggatgttgtaaat
cttgcaacaggtgagatcattgcagaagcaggtacggaggtaacaagaagtcttgcggat
gatatccagaatgcagctgttccatatgtatggatccagacagagacaagaaatgtcaaa
gtcctttcatctatgatggttgatttaagagcatatgtagactgcaatccaaaagatctt
ggtatcactgagttagtatattatccggtacttgcccagttaatggaagagcataccgat
attgatgacttaaaagaagctatcaaaaagaatgtgcatgacctgattccgaaacatatt
actaaagatgatatttttgcatccatcaactacaatatgcacttagagtatggtatcgga
aatgatgacgatatcgatcatcttggaaacagacgtatccgtgcagttggtgagttatta
cagaaccagtatcgtatcggtctttcaagattagagagagtggtacgtgagagaatgacc
acattagatttagatggtatttctccacagagtctgatcaacattaagccggtaacagca
gcggtaaaagagttcttcggatcttcccagctgtcacagttcatggatcagaacaacccg
ttaggtgagctgacacataagagacgtctctccgcattaggaccgggtggtctttccaga
gaccgtgccggattcgaggtacgagatgttcactattcccattacggaagaatgtgcccg
atcgagacacctgagggaccaaacatcggtcttatcaactcactggcaagttatgcaaga
atcaacgagtatggtttcgtagaggcaccgtaccgtaaaattgataaatcagatcctaag
aatccgcgtgtcacagatgaagtagtttatatgacagcagatgaagaggataactatcac
gtagcgcaggcgaatgaggctctggatgcagaaggacattttgtacgtaattccgtatcc
ggtcgttacagagaggagacacaggagtatgagaaaaccatgtttgattacatggacgta
tctcctaagatggtattctctgtcgcaacagcacttatcccgttcttacagaacgatgat
gcaaaccgtgcactgatgggatctaacatgcagcgtcaggcagtgccgcttcttaccaca
gatgctccggtagtcggaacaggtatggagacaaaggcagccgttgactccggtgtatgt
gtgatcgcaaagaaatctggtatcgtagaaagctctgaatcaaaccagatcatcattaag
agtgatgaaggaaccagagatgtatataaactgacgaagttctcaagaagtaaccagtct
aactgttacaaccagagaccgattgtattcaaaggtgaccgtgtggaagccggagaagta
attgcagacggtccgtctacatcaaatggtgagttagcacttggaaagaacccgttgatc
ggattcatgacctgggaaggttacaactacgaggatgccgttctcttaagtgagagactg
gtacaggatgatgtttacacatccatccatatcgaggaatatgaagcagaagcacgtgat
acaaaactcggaccggaagaaatcacaagagatgttcctggtgtcggtgatgatgcgtta
aaagatcttgacgagagaggtatcatccgtatcggtgcagaggttcgtgccggtgatatc
ttagtcggaaaagttactccgaagggagagacagagctgactgctgaggagagactgctt
cgtgcgattttcggtgagaaagcgagagaagtacgtgatacttccttaaaggtaccacat
ggtgaatatggtatcgtagttgatgcaaaggtatttacaagagaaaacggtgatgagtta
tctcctggtgtaaatcaggcagtccgcatttatattgcacagaagaggaagatctctgtc
ggtgataagatggctggtcgtcatggtaacaagggtgtcgtttcccgtgtacttcctgtt
gaggatatgccattcctgccaaacggacgtccgcttgatatcgtattaaatcctcttggt
gtgccgtcccgtatgaacattggtcaggtccttgagattcacttaagtcttgctgcaaaa
gcacttggatttaatatcgagacaccggtattcgatggcgcgaaagagattgatatccag
gatacacttgagcttgcaaatgactatgtaaatatgccgtttgatgctgcagaagcagaa
aaagaaggcaaaacagagagctttgaagaaaaatataaagatatattaagagaagacgtt
atgaagtatctttctgacaatcgtgcacaccgtgcactgtggaaaggcgttccgatctcc
cgcgacggaaaggttcagcttcgtgacggacgtaccggagagccgtttgattcaccggtt
accattggacacatgcattatctgaaactccaccatctggtagatgataagatccatgca
cgttctactggtccttactccttagtaacgcagcagccgttaggtggtaaagcacagttc
ggtggtcagcgtttcggagagatggaggtttgggcactggaagcatacggtgcatcctat
accttacaggagatcttaacagtaaaatccgatgatgttgtcggacgtgttaagacttac
gaagcaattattaagggtgataatatccctgaaccgggtatcccagagtctttcaaggtt
ctgttaaaagagcttcagtcacttggtctggatgtcaaagtcttagatgaggacagaaac
gaagtagagctgatggagacaagcgaatacggcaatacagatttgaattccattatttcc
ggagataaggattttgcatttgaggacagtgattcctttgcaaagatgggattctcacag
aaagagttcaatgcggaaaatgaagaactcgtagatgtggatgaggaaccggaggaagat
gaggatgattccgactttttcgacgatgcagaagaaaatactcttgacgaagaataa
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