Roseburia intestinalis XB6B4: RO1_24950
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Entry
RO1_24950 CDS
T02597
Name
(GenBank) excinuclease ABC, C subunit
KO
K03703
excinuclease ABC subunit C
Organism
rix
Roseburia intestinalis XB6B4
Pathway
rix03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rix00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RO1_24950
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rix03400
]
RO1_24950
DNA repair and recombination proteins [BR:
rix03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RO1_24950
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
UvrC_RNaseH_dom
GIY-YIG
HHH_2
HHH_5
UVR
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
CBL12964
UniProt:
D4L024
LinkDB
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Position
complement(2516616..2518496)
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AA seq
626 aa
AA seq
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MFNIAEELKKLPDQPGVYIMHDSHDAIIYIGKAVSLRKRVHQYFQPSHDEGIKKAQMVKQ
IARFEYIITDSELEALVLECNLIKEHCPKYNTMLRDDKTYPYIRVTVGEDFPRVLFSRQQ
KKDKSRYFGPYTSAGAVKDTIELINKLYQLRTCNRVLPRDTGKERPCLNYHIHQCQAPCQ
GYISREEYRERIDAAVEFLNGNYAPILKSLEEKMNEASENLEFEKAIEYRELLGSVRQIA
QKQKITHTDGEDKDIIALASDDRDAVVQVFFIRDGKLIGRDHFYVRVGTEDTKSQILTTF
LKQFYSGTPFIPREIMLPEEIEDHEVLAEWLTEKRGARVYIRVPQKGMKEKLVELAQKNA
ELVLSQDREKIKREEGRTIGAMKEIEHLLGMEGLSRVEAFDISNINGFETVGSMIVYEKG
KPKRSDYRKFKLKTITGPDDYASMHEVLTRRFTHGMQEKKELAEREMSEEYGSFTRFPDL
IMMDGGRGQVNIALKVLDELKINIPVCGMVKDDNHRTRGLYYQNKEIPIDRTSEGFKLIT
RIQDEAHRFAIEYHRSLRSKEQVHSVLDDIPGIGPARRKALMRRFQSLEAIREASEEELA
KTESMNEQAARAVYSFLREDKHGYSS
NT seq
1881 nt
NT seq
+upstream
nt +downstream
nt
atgtttaacatcgcagaagaattaaaaaaactcccggatcagccgggagtttatattatg
catgacagccacgatgcgatcatctatatcggtaaggctgtcagtttacgaaagagagta
caccagtatttccagccgagtcatgatgagggcatcaaaaaggcacagatggtaaaacag
atcgcacgtttcgagtatattattacggactcggaattagaggcgcttgtgttggagtgc
aacctgatcaaggaacattgtccaaaatacaataccatgctgcgcgatgacaagacttat
ccatatatccgtgtgacggtcggtgaggatttcccacgggtactcttttcacgtcagcag
aaaaaagacaaatcgagatattttgggccatacaccagtgcgggggcagtaaaagatacg
atcgagctgatcaataagctttaccagcttcgtacctgtaaccgtgtactgccgagagat
accggcaaagagcgcccatgtttaaattaccatatccatcagtgccaggcaccctgtcag
ggttatatcagcagggaagaataccgggaaagaatcgatgctgccgtcgaatttttaaat
ggaaactatgcaccgatcttaaaatccttagaagaaaaaatgaacgaggcatccgaaaat
ctggaatttgaaaaggcaatcgaataccgggagcttttaggcagtgtgcgccagatcgcg
cagaaacagaagatcacgcataccgacggtgaggataaagacatcatcgcgcttgcatcg
gatgacagggatgccgtggtgcaggtatttttcatccgtgacggaaagctgatcggcagg
gatcatttttatgtcagggtcgggacagaggataccaaaagccagatcttaacaactttt
ttaaaacagttttattcgggaacgccgtttattccaagggagatcatgctgccggaggag
atcgaggatcacgaggtcttagccgagtggttaactgaaaaaagaggagccagggtttat
atccgtgttccgcaaaaaggtatgaaggaaaaattggtagagctggcgcagaaaaatgca
gagcttgtactttcccaggatcgcgagaagatcaaacgcgaggagggaagaaccatcggc
gcgatgaaagagatcgagcatcttctggggatggagggactttcccgcgtggaggcattt
gatatttccaacatcaacggttttgagacggtaggatccatgatcgtctacgaaaaggga
aaaccaaaacgcagtgattatcgtaaattcaaattaaaaaccatcacagggccggacgat
tacgcatccatgcatgaggttttgaccagacgttttacacacggtatgcaggagaaaaaa
gaacttgcagaacgggaaatgtcagaggaatatggaagtttcacaagatttccggatctg
atcatgatggatggcggccgcggacaggtaaacattgcattaaaagtgcttgatgaactg
aaaataaatattccggtctgcggtatggtaaaggatgataatcaccgcaccagagggtta
tactatcagaataaagagataccgatcgaccggacaagcgagggctttaaactgatcacg
aggatccaggatgaagcgcaccgttttgccatcgagtatcacagatctttaagaagcaaa
gaacaggtacattccgtacttgacgatattccgggcatcggtccggcacgaagaaaagcc
ttaatgcgccggttccagtcacttgaggcgatccgtgaggcttcggaggaagaactcgca
aagacagagtcgatgaatgagcaggcggcacgggcagtttattcttttctccgggaagat
aaacacgggtattcaagttga
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