Rhinichthys klamathensis goyatoka (western speckled dace): 130070027
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Entry
130070027 CDS
T09701
Symbol
cngb1a
Name
(RefSeq) cyclic nucleotide-gated cation channel beta-3 isoform X1
KO
K04952
cyclic nucleotide gated channel beta 1
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg04744
Phototransduction
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09150 Organismal Systems
09157 Sensory system
04744 Phototransduction
130070027 (cngb1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
rkg04040
]
130070027 (cngb1a)
Ion channels [BR:
rkg04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
130070027 (cngb1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
cNMP_binding
Motif
Other DBs
NCBI-GeneID:
130070027
NCBI-ProteinID:
XP_056090248
LinkDB
All DBs
Position
Unknown
AA seq
1301 aa
AA seq
DB search
MFSWVVKVVPQPPASPGKLGEEDQTNASTSADVTKKEDVKQEANPSKSKEEVSEESSSQN
GVLSWLSNGFSSALPQPVNASKLGNAELKQEGNAVSNSNTSDQAGMIGWIVQGLGKVVPQ
PDEKYKGQTEPEEVTEPAVVPVVKVDPPVQEAKDIRDAEPLPHIPVVEVVSDEEPDAANV
PFSPRVIEWIKHGFEKVVPQSPMHLHPPSGTETPVQRAASAPVTPCKQEPAPEPTPAPAP
PPAPAPTPAPAPVPAAPEQPKLAEDPKGTNMVGWIVQGFGRMMPQPVLKPKEDSSDIVQN
VCILQDPCEMVLEEVDSDWDAQQKEQGSGQDVLVQQENSSLLQVIPNILPHLLAMQDQED
AETQTERWTPLIESIKKEAEETALANIEERLEQERVEAARMAEDLALQAAELAVRQLAEE
HTTHIIINTTNEEPDHADQLPNIQEEENEEDPELQPFHEESEEESEDSKITDVDIKRSLV
DICPAEPSPHESEVSDQAPQSPPPLQADTVSPAVTTQPERATSVPPDADQEEEPPEEGCG
ESSHVKPAVMVEEVKDGEMSVPKIIVAPESDSMTLTVTVTNLPEEETAPAEEEEDSRMDP
NTTDLLNVAEGLERPMSAASQTSMVVNERLQELVKLFKGRTVRVRDKLTDPDDSDEESPT
ASPAKKPADAPPPPPPPPPPEENKEADEEAEEEVQIYEFMGYKFPVPQVKIPEIPDWLRA
ILEYRFPSSIDPFTDLIYVVWLFFVTFAWNWNVWLIPVRCTFPYQNSENVHWWLLMDYLC
DAIYILDIVVFQPRLQFVRGGDIVCDKKDMRENYLQTERFKMDVISLFPLDVLYVFTGVK
SLLRFPRLLKYNAFFEFNDRLEAVMSKAYIYRVIRTSAYLLYSLHCNACIFYWGSDYEGL
GSTKWVYNGKGNSYIRCYYFAVKTLITIGGLPDPTTVFEIVFQLVNYFVGVFAFSIMIGQ
MRDVVGAATAGEAYYRSCVDSTVKYMSSYKIPREVQNRVKTWYDYTWKSQGMLDEQELLV
QLPDKMRLDIAADVNYSIVSKVALFQGCDRQMIFDMLNRLKSVVYLPGDFVCKKGEIGRE
MYIIKAGEVQVVGGPDGITVFVTLRAGSVFGEISLLAGGGGNRRTANVKAHGFANLFILD
KKDLADILVHYPESQKLLRKKAKKMLTKDKKPTDEKVKETGEVITERPETPKLYKAALEL
AKGQTFAKLKESYKGATLEPSTPGSGMTSTGPVPPPSPMHRRSPVPRPRMQDDDDMVSET
TDSTMIIRMTPRVEGEEILTVEVGPAEGVEGEEELSKTEDK
NT seq
3906 nt
NT seq
+upstream
nt +downstream
nt
atgtttagctgggtggtaaaagttgttccccagcctccagcgtctcctgggaaactggga
gaggaggaccaaaccaatgcgtccacatcagcagatgtgacgaaaaaagaggacgtaaaa
caagaagccaacccttccaagtcaaaggaggaggtctcagaggaaagcagctctcagaat
ggggttttgagttggctttctaatgggttcagcagtgctctccctcagccagtgaacgcc
tctaaactgggcaacgctgaactcaagcaagagggaaatgcagtgagcaacagtaacaca
tcggaccaggctgggatgataggatggattgtgcagggactgggaaaagtggttccacag
ccggatgagaaatacaaggggcaaacagagccagaggaggtcactgagcctgcagttgtt
ccagtggttaaagtggatcctccagtacaagaggccaaagacattcgtgatgctgagccg
ctgcctcatattcctgtggtggaggttgtgtctgatgaggagccagacgctgctaacgtt
cccttctctccaagggtaatagaatggattaagcatggttttgagaaggtagtccctcag
tctcctatgcatcttcatcctccctctggtacggaaacacctgttcagagggctgcttct
gctcctgtcacaccctgcaaacaagagccagcacctgaaccaacacctgctcctgcacct
ccacctgcacccgcaccaacaccagcacccgcacctgtacccgcagctcctgagcaacct
aaactagctgaggatcccaaaggcacaaacatggttggctggattgtacaggggtttgga
cgcatgatgccacaaccagtactgaaaccaaaagaggacagttctgatatcgttcaaaac
gtctgcatcctgcaggacccgtgtgagatggtgctggaggaggtggactcagactgggat
gcccagcagaaggagcagggctcggggcaggacgtcctggtgcagcaggagaactcgtct
ctgctgcaggtgatacccaacatccttccacacttgctggccatgcaggatcaggaggac
gcggagacgcagactgagcgctggacgcctcttattgagagcatcaagaaggaagcggag
gagactgccttagcaaacatagaggagagactggagcaggaacgcgtggaggcagctcgc
atggcggaggatctggccctacaggctgcagaattggccgtcagacagctggcagaagag
cacaccacacatatcatcattaatacgacaaacgaagaaccagaccatgcggatcaactg
ccaaatatccaggaggaagagaatgaagaagacccagagttacagccgtttcatgaagag
agtgaggaggagagtgaggatagtaagatcacagatgtcgacataaaaaggagcctggtg
gacatctgtccggcggagccctcgccgcacgagtctgaggtttcagatcaggcacctcag
agtccaccgccgctacaagcagatacggtctctccagctgtgaccactcagcctgagcgc
gccacatctgtacctcctgatgctgaccaggaagaggaacctcctgaagaaggatgtgga
gaaagcagccatgtgaagccagcagtgatggtagaggaagtgaaggatggagaaatgtcc
gttcccaaaatcattgtcgcaccagagtcagactcaatgaccctcactgtcactgtaaca
aatctgccagaggaggagacggctcctgctgaggaagaggaagacagtcgaatggatccg
aacacgactgatctactcaatgtggccgaaggccttgagcggcccatgtctgcggccagt
caaacaagtatggttgtgaatgagcgactgcaggagctggtcaagctgtttaaggggcga
acagttcgtgtaagagacaaactgactgatccagacgactctgatgaggaaagccctaca
gcatctcctgccaaaaagcctgccgatgccccgcctcctcctcctcctcctcctcctcct
gaggaaaataaagaagctgatgaggaggctgaagaggaggtgcaaatctatgagtttatg
ggatacaagttcccagttcctcaggtgaaaatacccgagatccctgattggctgagagct
atactggagtaccgtttcccgtccagcattgatcccttcacagatttgatctacgtggtg
tggctgttctttgtgacgtttgcgtggaactggaatgtttggctgatccctgtgcgctgc
actttcccgtatcagaactctgagaacgttcactggtggctgctgatggactacctctgt
gacgccatttacattcttgacatcgtggtctttcagcccagactgcagtttgtgagagga
ggggacattgtgtgtgacaaaaaagacatgagagagaactacttgcaaacagagcgattt
aagatggatgtgatcagtctctttccactggatgtcctgtacgtcttcacgggagtcaaa
tcactcttgcggtttcctcgccttctaaagtacaatgcattctttgagtttaatgatcgt
ctggaggctgtgatgagcaaagcatacatttacagggtgatccgtacgagtgcgtacctg
ctgtactctctgcactgtaatgcctgtattttctattggggatctgactatgaaggactg
ggttctactaaatgggtctataatggcaaaggaaacagttatattcgctgctactacttt
gctgtgaagactctgatcaccatcgggggtttgcctgatcccaccactgtctttgaaatc
gtctttcaactggtcaactacttcgtgggagtctttgctttctccatcatgatcggtcag
atgagagatgtagtcggagccgccactgcaggtgaggcgtactacagaagctgtgtggac
agcaccgtcaaatacatgagctcctacaagatcccccgcgaggtccagaaccgagtgaag
acctggtacgactacacctggaagtcgcaaggcatgctggatgaacaagagttacttgta
cagcttccagataagatgcgtctggacatcgcggcagacgtaaactacagcattgtcagt
aaagtggcgctctttcagggatgtgacagacagatgatatttgacatgctcaacaggctg
aaatctgtggtgtaccttcctggagattttgtttgtaaaaaaggtgagatcggtcgagag
atgtacatcatcaaagctggagaagtgcaggtggttggagggcctgatgggatcacggtg
tttgtgactctgagagctggctctgtgttcggggaaattagtttgctggcgggtggtggt
gggaaccgacgaaccgctaacgtaaaggcccatggttttgctaacctcttcatcttggat
aagaaggacctggcagacatcttagtacactatcccgagtcccagaagctactgcgcaag
aaggccaagaaaatgttgacgaaagataagaagcctacagatgagaaggttaaggagacg
ggtgaggtcatcactgagcggccagagacacccaaactctacaaggctgccctggagctt
gccaaaggacaaacatttgccaagctgaaggagtcatataagggagcaactctagagccg
tccactcctggctccggcatgacctccacaggtccagtgccccctccctccccaatgcac
cgacgctcgcccgttccccggcctcgcatgcaggatgatgatgacatggtatcagagacc
actgacagcaccatgatcatccgcatgactccccgcgttgagggagaggagatcctcacc
gtggaggtcggtcctgcagagggggtggaaggggaggaagagctgagcaaaactgaagac
aagtga
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