KEGG   Rhinichthys klamathensis goyatoka (western speckled dace): 130073706
Entry
130073706         CDS       T09701                                 
Symbol
skic8
Name
(RefSeq) SKI8 subunit of superkiller complex protein
  KO
K12602  WD repeat-containing protein 61
Organism
rkg  Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:rkg00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    130073706 (skic8)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rkg03019]
    130073706 (skic8)
Messenger RNA biogenesis [BR:rkg03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Ski complex
     130073706 (skic8)
SSDB
Motif
Pfam: Beta-prop_IFT122_1st Beta-prop_WDR5 WD40 Beta-prop_THOC3 Beta-prop_WDR3_1st WD40_Prp19 Beta-prop_EML_2 WD40_WDHD1_1st Beta-prop_WDR3_2nd WD40_CDC20-Fz WDR55 WD40_Gbeta Beta-prop_WDR36-Utp21_2nd EIF3I Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd ANAPC4_WD40 Beta-prop_WDR36-Utp21_1st WD40_MABP1-WDR62_1st Beta-prop_WDR75_1st Beta-prop_EML Beta-prop_TEP1_C Beta-prop_SCAP WDR90_beta-prop_4th DSE1_N CFAP251_N Beta-prop_RIG_2nd Beta-prop_Aladin Beta-prop_VPS8 Beta-prop_ACSF4 Beta-prop_WDR19_1st Beta-prop_NOL10_N Beta-prop_Vps41 Beta-prop_WDR35_TULP_N eIF2A Beta-prop_EIPR1 WD40_RFWD3 Beta-prop_NWD2_C Beta-prop_SPT8 Beta-prop_WDR41 Beta-prop_DCAF4 PD40 Beta-prop_Nup120_160 Tricorn_2nd Beta-prop_IFT140_1st Beta-prop_NUP159_NUP214 Ge1_WD40 ASA1 PROPPIN Beta-prop_HPS5 Cytochrom_D1 TRM82_WD PAC11 Beta-prop_WDR75_2nd WDR54 WD40_like BCAS3_WD40 Beta-prop_DCAF12 UCP007778 Nucleoporin_N Beta-prop_IFT122_2nd Beta-prop_pof12 DUF2415
Other DBs
NCBI-GeneID: 130073706
NCBI-ProteinID: XP_056095245
LinkDB
Position
Unknown
AA seq 305 aa
MSTQYSILFKQEHAHEDAIWTAAWGRSEKDGSETIVTGSLDDLVKVWKWSDEKLELQWTL
EGHQLGVVSVDISQNGAIAASTSLDAHIRLWDLETGKQIKSMDAGPVDAWAVAFSPDSKY
IATGSHLGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKHLASGAIDGIINIFDIATG
KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHGSWVLNVAF
SPDDTHFVSSSSDKSVKVWDTSSRSCVNTFFDHQDQVWSVKYNPTGSKIVSAGDDRAIHI
YDCPK
NT seq 918 nt   +upstreamnt  +downstreamnt
atgagcacacagtacagtatactattcaagcaggagcatgctcatgaagatgccatctgg
acagcggcatggggtcgcagcgagaaggacgggtcagaaaccatcgtgaccggatctttg
gacgacctggtaaaagtgtggaaatggtcggacgaaaagctggagctccagtggacgctg
gagggtcaccagctgggcgtggtgtcggtggacatcagtcagaacggagcaattgccgcc
tccacctctcttgacgctcacattcgactctgggacctggagactggtaaacagatcaag
tccatggacgcgggtccagttgacgcctgggcggtcgccttttctcctgactccaaatac
atcgccactggcagccatctagggaaggtcaacatcttcggcgtggaaagcgggaaaaag
gagtactcgctggacaccagagggaaattcattctgagcatcgcctatagtccagacgga
aagcacttagccagcggtgcaatagacggaatcattaatatatttgatattgcgactggg
aaactcctgcacacgctggaaggtcatgcgatgcctatcaggtctctgaccttttctcca
gactctcagctgctggtaaccgcatcagacgatggctacatcaagatttatgacgtgcaa
cacgctaacctggcagggacactcagcggtcacgggtcctgggtgctgaacgtggccttt
tcacccgacgatacgcactttgtgtccagttcgtctgataagagtgtgaaggtgtgggac
acaagcagcagatcatgtgtgaacacgttctttgatcatcaggaccaggtttggagtgtg
aaatacaaccccacgggctccaaaatcgtctctgccggtgatgacagagccattcacatt
tacgactgtccgaagtga

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