Rhinichthys klamathensis goyatoka (western speckled dace): 130078780
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Entry
130078780 CDS
T09701
Symbol
cntn1b
Name
(RefSeq) contactin 1b
KO
K06759
contactin 1
Organism
rkg
Rhinichthys klamathensis goyatoka (western speckled dace)
Pathway
rkg04514
Cell adhesion molecule (CAM) interaction
rkg04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
rkg00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
130078780 (cntn1b)
04517 IgSF CAM signaling
130078780 (cntn1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
rkg04515
]
130078780 (cntn1b)
00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
rkg00537
]
130078780 (cntn1b)
Cell adhesion molecules [BR:
rkg04515
]
Immunoglobulin superfamily
Contactins
130078780 (cntn1b)
Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
rkg00537
]
Others
130078780 (cntn1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ig_3
I-set
ig
Ig_2
fn3
V-set
FN3_DSCAM-DSCAML_C
C2-set_2
Fn3-III_PB4
Motif
Other DBs
NCBI-GeneID:
130078780
NCBI-ProteinID:
XP_056100417
LinkDB
All DBs
Position
Unknown
AA seq
1029 aa
AA seq
DB search
MVTPAMFVCVLSYFFLMAAAIKPRIFEPRIFDKEATGFGPIFEEEPLDTVYAEDSPESKI
SMNCRVRANPPAIIKWWLNNWEIKLMEQPDEHFSLVGGNLLITNPEKSKHAGKYVCVAKN
VYGTVISKEASVKFGYLNQFPTDEREPVNVKEGQGAVLLCSPPSRYPSEVMFRWIYNDFP
NFILPDQRRFVSQTTGNLYIAKVEASDVGNYSCFVSSPTIGKSVFSMPIPLIPQIEKEVK
RYPADIRVKFPKTYALVAQNITLECFALGNPLPHIRWRKLDADLPPNYEVSMNGALLHLL
NVQYEDEGSYECETLNVKGMDWYRQWLYVEGAPEWAEHINDTEKDVGSELTLRCVAVGKP
QPWIRWLKDGYSYGKGELKFSSLTFEDSGMYQCIAENEWGTIYASAELRVVSCAPTFIYN
PVKKVLLGAENGRVVIECNPRAAPKPKFIWKRGSELLNNSSRMLIWDDGSLEILNATKSD
EGSYTCYAENDRGKSNSTGTLTITEATKITEAPSDTEAVVGDSRVLQCSASYDPSLDITF
IWTVDSYVINFYTDFEHYEQLMGHEHSGDLLIKNIQVRHAGHYTCTAQTIVDNATAEAEV
IVKGLPGPPGGIRVEEIGVTSVKLRWCLGSDHGSLLIQHVVQTRDFYALDPEDWKTASTS
PVFLDGSTESATVVDLYPWMQYEFRVYAINEFGAGENSRPSIKIKTWDAIPTVAPSDVIG
QVGITGELIVTWTPVKPQFFFGKKFGYAVAFKPHEDKEWKWSIMEDPETRRYVYKESMTP
DTEIQVKVSTFNSKGEGPPSLIAVVFSPRLAPTEAPLDVYARQVTSTEALVWWLPVYQAP
PKWVDGYQIRYWRKYDDNEAAASRVIVHRMINQTRLENMRPDSHYLIEVRAFNGAGLGPP
SEHCEMFTRRPPPSRNLRVYKYVSFTRKWLYLYWDHIYNYWNESYVEGYKILFRKEGERY
GKLYTTGSHYIDFPMPETGDYVIEVRARCEGGDGPISQIRVQGKAALGAESLSVASVLLL
ALGWMNLGL
NT seq
3090 nt
NT seq
+upstream
nt +downstream
nt
atggtgaccccagccatgtttgtgtgtgttctctcttacttcttcttaatggccgctgca
attaaacccaggatatttgaacccagaattttcgacaaggaggccacaggctttggccct
atatttgaggaggagcctctagacaccgtgtacgcagaggattcaccagagagcaaaatc
tccatgaattgcagagtgcgggccaacccaccggccatcatcaaatggtggttaaacaac
tgggaaattaaactaatggaacagcctgatgagcactttagcctggtgggaggaaacctg
ctcatcaccaacccagaaaagagcaagcatgctgggaaatatgtgtgtgtggccaagaac
gtctacggcaccgtcatcagcaaagaggcctccgtcaaatttggatacctgaaccagttc
cctacagatgagagagagccggtgaatgttaaggagggacagggggccgtcctgctgtgt
tctcctccctctcgatatccaagtgaagtgatgttccgctggatctataacgacttcccc
aacttcatcctcccagaccagaggcgtttcgtgtctcagaccactgggaatctgtacatc
gctaaagtcgaggcatcagacgtcgggaattattcttgttttgtttcaagtcccaccatc
ggcaagagtgttttcagcatgccgattcctctgattccacaaatagagaaggaggtgaag
cgatatcctgctgatatccgtgtgaaatttcccaagacttatgctttggtggcacagaac
atcactctggagtgctttgcccttggaaatcctctcccacatatccgctggaggaagtta
gacgctgatctcccgcccaactatgaggtcagcatgaatggagcgttactgcacctgctt
aatgttcagtacgaggacgagggcagctacgagtgtgagacgctcaacgttaagggaatg
gactggtatcgacagtggctctatgtggagggtgctccagagtgggctgagcacatcaat
gacacagagaaagatgttggtagtgagctcactctcagatgtgttgctgtggggaagccc
caaccatggatacgctggctgaaggatggctattcgtacggcaaaggggagctgaagttc
tccagcctcacgtttgaggattcaggcatgtatcagtgcattgctgagaatgaatggggg
accatctatgccagcgcagagcttcgggtcgtctcctgtgcaccaacattcatttataat
ccagtgaagaaggttctgctaggggctgaaaatggacgtgtggtcatagagtgcaacccc
cgtgctgctccaaaacccaagttcatctggaaacgaggctcagagttactgaacaactct
tcaaggatgttaatttgggatgatggaagtctggagattctgaatgcaacaaaaagtgat
gagggctcgtacacttgttacgctgagaatgaccgtggcaaatccaacagcacagggacc
ctcactatcaccgaggccacaaagattactgaggctccatcagacactgaggcagttgtt
ggtgacagtagagttctccagtgctccgcatcatatgaccccagcctggacatcaccttc
atctggactgtcgattcctacgtcatcaacttctacacagactttgaacactacgagcag
ctcatgggtcatgagcacagtggagacctgctgatcaagaatattcaggtgaggcatgca
ggacactatacctgcacagctcagactatagtggacaacgccaccgcggaagctgaagtt
attgtcaaaggtttgcctggtcctccgggtggcatccgtgtggaagagattggagtcacg
tcagtaaaactgcgatggtgtctgggatcagaccacggcagtctcctcatccagcatgtt
gtgcaaacacgagacttttacgccctggatccagaggactggaaaactgcatccacttct
cctgtgtttttggatggatctacagagtcagcaaccgttgttgacctttacccctggatg
caatatgaattccgtgtttatgccatcaatgaatttggagctggggaaaacagccgtccg
tccattaaaatcaagacatgggatgccatacctacagtagctccttctgacgtcattggt
caggtgggaataaccggagagctaatcgtgacctggactcctgtgaaacctcagttcttc
tttggtaaaaaatttggctacgctgtggcgttcaagccgcatgaggataaagagtggaaa
tggtcaatcatggaggatcctgagacgagacgctacgtctacaaagagagcatgacccca
gacacagagatacaggtcaaagtgagcaccttcaacagcaaaggagaaggacccccaagt
cttatagcagtggtcttctcgccacgcctagcaccgactgaagctccattagacgtctac
gcccgccaggtcacctctacagaagctttggtctggtggttaccagtctaccaggcaccg
ccaaagtgggtcgacggataccagattcgttactggagaaagtacgatgataatgaggct
gctgcctcgagagtcattgtgcatagaatgattaaccaaacgcgcctagagaacatgcgg
cctgactctcattaccttatagaggtacgagcgttcaacggagccgggctcggaccgccc
agcgagcactgtgaaatgttcaccaggagaccccctccaagtcgtaatttgagagtatac
aaatatgtcagctttacacgcaaatggctctatctgtattgggatcacatctataactac
tggaatgagtcctatgtggagggttacaagattttgttccgaaaggaaggagagcgttat
gggaagctttacaccactggcagtcactacatcgactttcccatgccagagaccggcgat
tatgtcatagaggtccgagcccgctgtgagggaggtgatggacccatatcacagatcaga
gtacaaggtaaagcagctctgggtgctgaatctctcagtgttgcctctgtcttgctgttg
gctctgggctggatgaatttaggcctgtag
DBGET
integrated database retrieval system
