Rhodoluna lacicola: Rhola_00012500
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Entry
Rhola_00012500 CDS
T03203
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
rla
Rhodoluna lacicola
Pathway
rla03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rla00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Rhola_00012500
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rla03021
]
Rhola_00012500
03400 DNA repair and recombination proteins [BR:
rla03400
]
Rhola_00012500
Enzymes [BR:
rla01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Rhola_00012500
Transcription machinery [BR:
rla03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Rhola_00012500
DNA repair and recombination proteins [BR:
rla03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Rhola_00012500
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
Peptidase_M23
PV-1
Motif
Other DBs
NCBI-ProteinID:
AIC48043
UniProt:
A0A060JN76
LinkDB
All DBs
Position
complement(1249824..1253438)
Genome browser
AA seq
1204 aa
AA seq
DB search
MAAKNAKTQKNDRLAKRLSFAKSPEPIELPDLLSLQTESFDWLVGNPAWREKEGPKAKTG
LEEIFEEISPIEDASNSSQDAKMGLTFGNPELYDPSYTPDECKTKGKSYTQPLYIKAEFT
NYLTGEIKSQTVFMGDFPVMTEKGTFVINGTERVVVSQLVRSPGVYFSVSTNTTGNLDVR
NNKAQIIPSRGSYLEFLTEWVRDDRKPIARFGQPIIQVQVDRKTKVSATIFLKALGLSEE
QIREEFKDLESAVKAGAPNWTYDVDLIENTLAYDKSKVFANPILTKEDALRELYRKVRGE
AAGAEVSEAWLKSTYFESKRYNLAKVGRHKLNRKLGLSVDAAQNTLTVEDVVATLKYLLL
FDQQIANAAAVSTGARLEFPIKMGGKSVKIAVSSDDIDDFSNRRIRSVGELIQNQVRIGL
SRMERVVRERMSTQDIEAITPQTLINLRPVVSAIKEFFGASQLSQFMDQNNPLAGLAHKR
RLSALGPGGIARERAQMEVRDVHPSHYGRMCPVETPEGPNIGLIGSLTAYARINAFGFIE
TPYAKVVNGKVSKTIEYLDAAAEQGKAIGAAETPLNPDKTFANKKVFARFQGDVVEVDAE
DVDYLDISPRQLASVSTSLIPFLEHDDSSRALMGANMQRQAVPLLRSDSPFVGTGMERVA
AIDSGAVVINETAGVIAEVDADTITVQQDKGGTKTYVLRKFDRSNQGTAINQRIIVEAGQ
RVEAGEVLADGPSTDMGELALGKNLLVAFMPWEGHNFEDAIILSQNLVKEDTLSSIHIEE
YEVDARDTKLGKEEITSDLPNVSQEALAQLDERGIIRIGAEVRPGDILVGKVTPKGETEL
SAEERLLRAIFNEKSREVRDTSLKVPHGEQGTVIGVRVFDIEAGDDELGAGVNQRVVVHI
AQKRKITEGDKLAGRHGNKGVISKILPVEDMPFMEDGTPVDVVLNPLGIPGRMNFGQILE
THLGWISKQGWNVEGVAKWADAMVAEMRSAAPGTKVATPIFDGASKDEIVGLLNSTLPNR
DGKRLIDGTGKTRLFDGRSGEPFPAPISVGYMYILKLHHLVDDKIHARSTGPYSMITQQP
LGGKAQFGGQRFGEMEVWALQAYGAAHTLQELLTIKSDDITGRVKTYEAIVKGENIQAPG
IPESFRVLAKEMQSLALNVEVLNAAGQVVSLKEDDFESDRAAEELGINLSRNENSSVDTE
YTGF
NT seq
3615 nt
NT seq
+upstream
nt +downstream
nt
ttggctgcgaagaacgcaaaaacccagaagaacgatcgtcttgcaaagcgtcttagtttt
gcaaaatcaccagagccgatcgaactacccgatctactaagtctgcagactgagagcttt
gactggctcgttggtaaccctgcatggcgtgaaaaagaaggaccaaaggctaagaccggt
ctggaagaaatctttgaagagatctctccgatcgaagacgcctctaactcttcgcaggac
gcgaagatgggtcttacttttggaaacccagaactttacgacccttcatacactcctgac
gagtgcaagaccaagggcaagtcgtacacccagccgctttacatcaaggctgagttcacc
aactacctaaccggtgaaattaagtcacagacagttttcatgggtgacttcccagtcatg
actgaaaagggcaccttcgttattaacggaacagagcgcgtggttgtttcacagctagtt
cgttcacctggtgtgtacttctctgtttcaacaaacaccaccggtaacttggacgttcgt
aacaacaaggcgcagatcattccgtctcgtggttcttacctagagttcctaaccgagtgg
gtgcgcgatgaccgcaagccaatcgctcgttttggtcagccaatcattcaggtgcaggta
gatcgcaagactaaggtttctgcaaccatcttccttaaggcacttggtctttcagaagag
cagattcgcgaagagttcaaggatcttgagtcagcagttaaggctggagcacctaactgg
acttacgacgttgatctaattgagaacactcttgcctacgacaagtcaaaggttttcgct
aacccaatccttaccaaagaagacgcgcttcgcgagctataccgcaaggtacgtggcgag
gcagccggtgctgaagtttcagaagcatggttgaagtcaacttactttgagtcaaagcgc
tacaacttggcaaaggttggtcgtcacaagctaaaccgcaagctaggcctatcggttgac
gcagcgcagaacactcttaccgttgaagacgtagttgcaactttgaagtacctacttctt
ttcgaccagcagatcgctaacgcagcagccgtttcaaccggtgctcgtctagagttccca
atcaagatgggtggcaagtctgtaaagattgccgtttcatctgacgacatcgatgacttc
tcaaaccgtcgtattcgttcagttggtgagctaatccagaaccaggttcgtattggtcta
agccgtatggagcgcgttgttcgcgagcgtatgtcaactcaagacattgaggcgatcacc
ccgcagaccctgattaacctgcgtccagttgtgtcagcaatcaaggagttcttcggtgct
tctcagttgtcacagttcatggaccagaacaacccacttgctggcctggcccacaagcgt
cgtctatcagcgcttggacccggtggtatcgctcgtgagcgtgcccaaatggaggtccgt
gacgttcacccatctcactacggacgtatgtgtccagttgagactcctgaaggtccgaac
attggtcttatcggttcgctcactgcttacgcacgcatcaacgcgtttggtttcattgag
actccatacgcaaaggtcgtcaatggaaaagtttcaaagaccattgagtaccttgatgca
gctgcagagcagggcaaggctatcggtgctgccgagactccgctaaacccagacaagaca
tttgcaaacaagaaggtgttcgctcgcttccagggtgacgttgttgaagtagacgcagaa
gacgttgactacctagacatctcacctcgtcagcttgcatctgtttcaacatcattgatt
ccgttccttgagcacgacgactcgtctcgtgcgttgatgggtgcgaacatgcagcgtcag
gctgttccactgctacgttctgactcaccatttgttggaaccggtatggagcgcgttgcc
gcaatcgactctggtgcagttgtgattaacgaaaccgccggtgtcattgcagaagttgat
gcagacacaatcaccgttcagcaggacaagggtggaaccaagacttacgtacttcgtaag
ttcgaccgttcaaaccagggaactgcaatcaaccagcgaatcattgttgaagctggtcag
cgtgtagaggccggcgaagttcttgccgatggtccttcaaccgacatgggtgaactagct
ctaggtaagaacttgctagttgcgttcatgccatgggaaggtcacaacttcgaggacgcg
atcatcctgagccagaacttggttaaggaagacactctttcttctatccacatcgaagag
tacgaagttgatgctcgcgacaccaagctaggtaaggaagaaattacttctgacttacca
aacgtttcgcaagaggcattggctcagcttgacgagcgcggcatcattcgcattggtgca
gaggttcgccctggcgacatcttggttggaaaggtaacacctaagggtgagacagagctt
tcagccgaagagcgtttgctacgcgcgatcttcaacgagaagtcacgcgaagttcgcgac
acctcattgaaggtgccacacggtgagcagggaactgttatcggtgttcgcgtatttgac
attgaagctggcgatgacgaactaggtgccggtgtaaaccagcgcgtggtcgttcacatc
gcacagaagcgcaaaattaccgagggtgacaagcttgctggtcgtcacggtaacaagggt
gttatttctaagatccttcctgttgaagacatgccattcatggaagacggaactccggtt
gacgttgttctaaacccacttggtattcctggccgtatgaactttggtcagattcttgag
acccacctaggttggatttcaaagcagggttggaacgtagaaggcgttgcaaagtgggcc
gacgcaatggtcgcagaaatgcgttcagctgctccgggcaccaaggttgcaaccccaatc
ttcgacggtgcatcaaaggatgaaattgttgggcttctaaactcaactcttccaaaccgc
gatggcaagcgtctgattgacggaaccggtaagactcgtctattcgacggtcgctcaggt
gagccgttcccagcgccaatctcagttggttacatgtacatcttgaagttgcaccacttg
gtagacgacaagatccacgcacgttcaactggtccttactcaatgatcactcagcagcca
ctaggtggtaaggcgcagttcggtggacagcgctttggtgaaatggaagtatgggcgctt
caggcatatggtgcagcgcacacattgcaggagcttctaaccatcaagtctgacgacatc
actggtcgtgtgaagacttacgaggcaatcgtaaagggcgagaacattcaggctcctggt
attccagagtcgttccgcgttcttgcgaaagaaatgcagtcattggctctaaacgttgag
gttctcaacgcagctggccaggttgtatctctaaaggaagatgactttgagtcagaccgc
gcagcggaagaactcggcatcaacctttcacgcaacgagaactcatcagtcgacaccgag
tacaccggtttctaa
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