Rhizobium johnstonii: RL0832
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Entry
RL0832 CDS
T00402
Name
(GenBank) putative DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rle
Rhizobium johnstonii
Pathway
rle03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rle00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
RL0832
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rle03400
]
RL0832
Enzymes [BR:
rle01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
RL0832
DNA repair and recombination proteins [BR:
rle03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
RL0832
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_C
DNA_ligase_A_M
Motif
Other DBs
NCBI-ProteinID:
CAK06327
RhizoBase:
RL0832
UniProt:
Q1ML27
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All DBs
Position
901614..902405
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AA seq
263 aa
AA seq
DB search
MTKPPRKPSKPLLGDADALLHSRPHRRRDPNQPNLPLDPMPDRIEPCLALLKARPPKGDD
WVYEIKWDGYRLSVHIDPTGIRILTRGGHDLVPAGGQRDIRLSEEIETDGDQLLASACEH
GLEGIIAKRRDSPYRSGRLGDWVKIKRVLSDSFVIVGCKRSTVARAGIGRLLLAARKGMK
LVYVGGVGTGFNERNAYELRQKLDRLITSTPAAVVDRKGAIFVKPKLIAEIEYRGWADDG
KLRHASHKGLREEQDNAGVSEIE
NT seq
792 nt
NT seq
+upstream
nt +downstream
nt
atgaccaagccgcctcgcaagccttctaagccgctgctcggtgacgccgacgcgctgcta
cacagtcgcccacatcggcgccgagatcctaaccagcccaatctccccttagatccgatg
cctgatcgcatcgagccctgcctagcgttgctcaaagccagaccgccgaagggcgacgat
tgggtgtatgaaatcaaatgggatggctatcgcctgtcggtgcatatcgatccgacgggc
attcgcatcctgacgcgcggcggccatgatttggtgccggcaggcggccaaagggatatc
cggctttccgaggagatcgagaccgacggtgatcagctgctggcgagcgcctgcgaacat
gggttggaaggcatcatcgccaagcgccgggactcgccctatcggtcgggacgtctcggc
gactgggtgaagatcaaacgcgtcctgagcgacagctttgtcatcgtcggttgtaagcga
tccacagtcgcgcgcgccggcatcggtcggcttctgctcgccgcgcgcaagggtatgaag
ctggtttacgtcggcggggtagggaccggcttcaatgagcggaatgcttatgagcttcgt
cagaagctagaccgccttatcacatctacgccggctgcggtcgtcgatcgcaagggagca
attttcgtgaagccgaagctcattgccgagatcgagtatagggggtgggccgacgacggc
aagctgcggcacgcatctcacaaggggctgcgggaggagcaggataatgccggggtttct
gagatagagtag
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integrated database retrieval system
