Rhizobium leguminosarum bv. trifolii CB782: RLEG12_17730
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Entry
RLEG12_17730 CDS
T03015
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
rlu
Rhizobium leguminosarum bv. trifolii CB782
Pathway
rlu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rlu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
RLEG12_17730 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rlu03021
]
RLEG12_17730 (rpoB)
03400 DNA repair and recombination proteins [BR:
rlu03400
]
RLEG12_17730 (rpoB)
Enzymes [BR:
rlu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
RLEG12_17730 (rpoB)
Transcription machinery [BR:
rlu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
RLEG12_17730 (rpoB)
DNA repair and recombination proteins [BR:
rlu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
RLEG12_17730 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
DOCK-C2
Motif
Other DBs
NCBI-ProteinID:
AHG44963
LinkDB
All DBs
Position
1280385..1284524
Genome browser
AA seq
1379 aa
AA seq
DB search
MAQTLSFNGRRRVRKFFGKIPEVAEMPNLIEVQKASYDQFLMVEEPKGGRPDEGLQAVFK
SVFPITDFSGASMLEFVSYEFEPPKFDVDECRQRDLTYAAPLKVTLRLIVFDIDEDTGAK
SIKDIKEQSVYMGDMPLMTNNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKSHSSGKLLF
AARVIPYRGSWLDIEFDAKDIVYARIDRRRKIPVTSLLMALGMDGEEILDTFYTKSLYKR
DGAGWRIPFKPETLKGAKAITEMVDADTGEVVVEAGKKLTPRLLRTLSDKGLKALKAADD
DLYGNYLAGDIVNYSTGEIYLEAGDEIDEKTLGIILANGFDEIPVLGIDHINVGAYIRNT
LTADKNENRQDALFDIYRVMRPGEPPTMESAEAMFNSLFFDAERYDLSAVGRVKMNMRLD
LTVEDTVRILRKDDILAVVRMLVELRDGKGEIDDIDNLGNRRVRSVGELMENQYRLGLLR
MERAIKERMSSIEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQVNPLSEITHKRRL
SALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIESP
YRRIVEGKVTSDVLYLSAMEEAKYYVAQANAEMNADGSFVDEFVVCRHAGEVMLAPRDSM
NLMDVSPKQVVSVAAALIPFLENDDANRALMGSNMQRQAVPLLRAEAPFVGTGMEPVVAR
DSGAAIGARRGGVVDQVDATRIVIRATEDLEAGKSGVDIYRLQKFQRSNQNTCVNQRPLV
TVGDEVNRGDILADGPSTDLGDLALGRNALVAFMPWNGYNYEDSILLSERIVADDVFTSI
HIEEFEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVQPGDILVGKITPKG
ESPMTPEEKLLRAIFGEKASDVRDTSMRMPPGTYGTIVEVRVFNRHGVEKDERAMAIERE
EIERLAKDRDDEQAILDRNVYGRLIEMLRGQASIAGPKGFKKGTELSNAVVSEYPRSQWW
MFAVEDEKVQSELEALRGQYDESKSRLEQRFMDKVEKVQRGDEMPPGVMKMVKVFVAVKR
KIQPGDKMAGRHGNKGVVSRIVPVEDMPFLEDGTHVDVVLNPLGVPSRMNVGQILETHLG
WACAGMGRQIGELIEAYKANGNIEPLRKTIGDVVGDGPKAEQVHEFDDESVLRLADQWKR
GVSIATPVFDGAHEGDVNDMLRLAGLKDTGQSTLYDGRTGEQFDRQVTVGYIYMLKLNHL
VDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV
AGRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLSVELENTKLDEAQAAQLPDAAE
NT seq
4140 nt
NT seq
+upstream
nt +downstream
nt
atggctcagaccctttcgttcaacggtcgcaggcgcgtacgcaagttttttggtaagatc
cccgaagtcgcagaaatgccgaacctcatcgaggttcagaaggcgtcctacgaccagttt
ttgatggttgaagagccgaaaggcggccggcccgacgaaggccttcaggccgttttcaag
tcggttttcccgatcaccgatttctccggcgcgtccatgctggaattcgtgtcctacgag
ttcgaaccgccgaagttcgacgttgacgaatgccgtcagcgcgacctgacctatgcagca
ccgctgaaggtcacgttgcgcctaatcgtgttcgatatcgacgaggataccggcgcgaag
tcgatcaaggacatcaaggaacagtccgtctacatgggcgacatgccgctcatgaccaac
aatggcacgttcatcgtcaacggcaccgagcgcgtcatcgtctcccagatgcaccgttcg
ccgggcgtcttcttcgaccacgacaagggcaagagccattcttccggcaagctgctcttt
gctgcccgcgtcatcccctatcgcggctcctggctcgacatcgaattcgacgccaaggat
atcgtctacgctcgtatcgaccgtcgccgtaagatccctgtcacctcgctcctgatggcg
ctcggcatggacggcgaggaaatccttgacaccttctacacgaagtcgctctacaagcgc
gacggcgcaggctggcgcattcccttcaagccggaaaccctgaagggtgccaaggcgatc
accgagatggtcgacgccgataccggcgaagtcgtcgtggaggccggcaagaagctgacc
ccgcgtctgcttcgcacgctctccgacaagggcctgaaggcgctgaaggctgccgatgac
gatctctatggcaactacctcgccggcgacatcgtcaactactcgacgggcgagatctat
ctcgaagccggcgacgaaatcgacgagaagacgctcggcatcatcctggccaacggtttc
gacgagatcccggttctcggcatcgaccacatcaatgttggcgcctacatccgcaacacg
cttaccgccgacaagaacgagaaccgtcaggacgctctgttcgacatttaccgcgtcatg
cgtccgggtgaaccgccgaccatggaatcggccgaagccatgttcaactcgctgttcttc
gatgcggagcgttacgacctctccgccgtcggccgcgtcaagatgaacatgcgtctcgac
ctgaccgtcgaagacaccgtccgtatcctgcgcaaggacgacattctggccgtggtcagg
atgctggtcgaactgcgcgatggcaagggcgagatcgacgatatcgacaacctcggtaac
cgtcgcgtccgctcggtcggcgagctgatggaaaaccagtaccgtctcggcctgctccgc
atggagcgcgcgatcaaggaacgcatgtcctcgatcgagatcgacacggtcatgccgcag
gatctgatcaacgccaagccggcggctgccgccgttcgcgagttcttcggttcctcgcag
ctctcgcagttcatggaccaggtcaacccgctctcggaaatcacccacaagcgtcgtctt
tcggctcttggcccgggcggtctgacccgtgagcgcgccggcttcgaagtccgcgacgtg
catccgacccactacggccgtatttgcccgatcgaaacgccggaaggcccgaacatcggt
ctgatcaactcgcttgcgacctttgcccgcgtcaacaagtacggcttcatcgaaagcccg
taccgccgtatcgtcgaaggcaaggtgacgagcgacgtgctctacctctccgccatggaa
gaggcgaagtattacgtcgcccaggccaacgccgaaatgaacgccgacggctccttcgtc
gacgagttcgtcgtctgccgtcatgccggcgaagtcatgctcgcgccccgcgacagtatg
aacctgatggacgtttcgccgaagcaggtcgtttcggtcgcagccgcgctcatcccgttc
ctggaaaacgacgacgccaaccgcgccctcatgggctcgaacatgcagcgtcaggccgtg
ccgctgctgcgtgccgaagccccgttcgtcggtaccggcatggagccggtcgttgcccgc
gactcaggtgctgccatcggcgcccgccgcggcggcgtggtcgaccaggtcgacgcgacg
cgtatcgttatccgcgccactgaagacctcgaagccggcaaatccggcgtcgatatctac
cgcctgcagaagttccagcgttcgaaccagaacacctgcgtcaaccagcgtccgctggtc
accgtcggtgacgaggtcaaccgcggcgacatccttgccgacggcccgtcgaccgatctc
ggcgacctggcgctcggccgcaacgcgctcgtcgcgttcatgccctggaacggctacaac
tacgaagactcgatcctgctctccgagcgtatcgttgccgacgacgtgttcacctccatc
cacatcgaggaattcgaagtgatggcgcgcgacaccaagcttggtcctgaggaaatcacc
cgcgacattccgaacgtttcggaagaagcgctcaaaaatctcgacgaagccggcatcgtc
tatatcggcgccgaagttcagccgggcgatatcctcgtcggcaagatcaccccgaagggc
gaaagcccgatgacgccggaagaaaagcttctgcgcgccatcttcggcgaaaaggcctcc
gacgtgcgcgatacctccatgcgcatgccgcccggcacttacggcacgatcgtcgaagtt
cgcgtcttcaaccgccatggcgtcgagaaggacgagcgcgcgatggcaatcgagcgcgaa
gagatcgagcgtcttgccaaggaccgcgacgacgagcaggcgatcctcgaccgtaacgtc
tacggccgtctgatcgaaatgctgcgcggccaggcttccatcgccggcccgaagggcttc
aagaagggcaccgagctttcgaacgccgtcgtctccgaatatccccgctcgcagtggtgg
atgttcgcggtcgaagacgagaaggttcagagcgagcttgaagcgctccgcggccagtac
gacgaatccaagtcgcgccttgaacagcgctttatggataaggtcgagaaggtccagcgt
ggcgatgaaatgcctcctggcgtcatgaagatggtcaaggtcttcgtcgctgtgaagcgc
aagatccagccgggcgacaagatggccggccgacatgggaacaagggcgtcgtttcgcgc
attgtgcctgtcgaggacatgccgttcctcgaagacggcacgcatgtcgacgtcgttctg
aacccgctcggcgttccatcgcgcatgaacgtcggccagatccttgaaacccacctgggt
tgggcttgcgccggcatgggtcgccagatcggcgaactgatcgaggcatacaaggccaat
ggcaacatcgagccgctgcgcaagaccatcggcgatgtcgtcggtgacggtccgaaggcc
gaacaggtccacgagttcgacgacgaatctgttctgcgtcttgccgaccagtggaagcgc
ggcgtttcgattgcgacgcctgtcttcgacggtgctcacgaaggcgacgtcaacgacatg
ctgcgtctggcaggtctcaaggataccggtcagtcgacgctttatgatggccgtaccggc
gagcagttcgaccgccaggtcaccgtgggctacatctacatgctgaagctcaaccacctg
gtcgacgacaagatccatgcccgttcgatcggtccttactcgctcgtgacccagcagccg
ctgggtggcaaggcgcagttcggcggccagcgcttcggcgaaatggaagtctgggcgctc
gaagcatacggcgcggcctacacgctgcaggaaatgctgacggtgaagtcggacgacgtc
gccggccgcaccaaggtctacgaagccatcgtccgcggagacgacacgttcgaagccggt
attccggaaagcttcaacgttctcgtcaaggaaatgcgctcgctgggccttagcgtcgag
ctcgaaaacaccaagcttgacgaggcgcaggcagctcagctgcccgacgcggccgagtaa
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