KEGG   PATHWAY: rmai00020
Entry
rmai00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Roseicyclus marinus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
rmai00020  Citrate cycle (TCA cycle)
rmai00020

Module
rmai_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:rmai00020]
rmai_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:rmai00020]
rmai_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:rmai00020]
rmai_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:rmai00020]
rmai_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:rmai00020]
Other DBs
GO: 0006099
Organism
Roseicyclus marinus [GN:rmai]
Gene
MACH21_04980  icd; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
MACH21_05140  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
MACH21_05160  sucB; dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
MACH21_05170  sucA; 2-oxoglutarate dehydrogenase subunit E1 [KO:K00164] [EC:1.2.4.2]
MACH21_05180  sucD; succinate--CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
MACH21_05200  sucC_1; succinate--CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
MACH21_05250  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
MACH21_05320  [KO:K00241]
MACH21_05330  sdhD; succinate dehydrogenase [KO:K00242]
MACH21_05340  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
MACH21_05360  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
MACH21_12150  pdhB; acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
MACH21_12160  pdhAb; pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
MACH21_12170  pdhA; pyruvate dehydrogenase E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
MACH21_12240  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
MACH21_15140  fumC; fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
MACH21_17480  [KO:K00382] [EC:1.8.1.4]
MACH21_19730  [KO:K27802]
MACH21_21470  pycA; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
MACH21_30740  pckA; phosphoenolpyruvate carboxykinase [ATP] [KO:K01610] [EC:4.1.1.49]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
rmai00010  Glycolysis / Gluconeogenesis
rmai00053  Ascorbate and aldarate metabolism
rmai00061  Fatty acid biosynthesis
rmai00071  Fatty acid degradation
rmai00190  Oxidative phosphorylation
rmai00220  Arginine biosynthesis
rmai00250  Alanine, aspartate and glutamate metabolism
rmai00280  Valine, leucine and isoleucine degradation
rmai00350  Tyrosine metabolism
rmai00470  D-Amino acid metabolism
rmai00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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