Rhopalosiphum maidis (corn leaf aphid): 113552854
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Entry
113552854 CDS
T06065
Name
(RefSeq) exosome complex component RRP45-like isoform X1
KO
K03678
exosome complex component RRP45
Organism
rmd
Rhopalosiphum maidis (corn leaf aphid)
Pathway
rmd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rmd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113552854
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rmd03019
]
113552854
Messenger RNA biogenesis [BR:
rmd03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
113552854
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
YwtC
Motif
Other DBs
NCBI-GeneID:
113552854
NCBI-ProteinID:
XP_026811641
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All DBs
Position
2:complement(34326093..34330689)
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AA seq
402 aa
AA seq
DB search
MNLNPLSDCEKMFILEAASQKIRLDGRKKDEYRPLKIEFGLDWGNCLVTLGCTRVFAQVS
CEIYQPNNSRPNEGVLQISAELAGDNKLNDLTKINQVLERFYKDSKCIDLEALCIIAEEK
VWKIKVDLSVLNMDGNTLGCCSIATLAALMHFRHPDVMSTGEKVIVYSSSERDPIPLSLH
HHPVIVNFAIFEKYDFIILDPSFLEDKVCDNKLSICFNNHREMCGVDIEGCASLSQDLLM
NCSNQAASVAIKLVDKIKSAIQIDIKNRSSSKSVKGLEPAVSEDNGLKLCLSDKLNFVGP
SNRENKIEEIDEKMVVDQEVIKITDGTAFTTSHNLHQTNYVKQNERNDNLIVIDPESSES
SSSSDDSVEVVSHYKLDDIRPVIGKYVVSDDDNSDSGTIILD
NT seq
1209 nt
NT seq
+upstream
nt +downstream
nt
atgaatttaaatcctttatcagattgtgaaaaaatgttcatattggaagcagcatctcaa
aaaattcgtcttgatggtcgtaaaaaagatgaatatagaccattaaaaattgaatttgga
ctagactggggtaattgtctagtaacacttggttgtacacgtgtctttgctcaagttagc
tgtgaaatatatcaacctaacaatagtcgtccaaatgaaggtgtactgcaaatatctgct
gagttagcaggagacaacaagcttaacgatctaacaaaaataaatcaagttttagaaaga
ttttataaagattcaaaatgtatagatcttgaagcattatgtataattgccgaggaaaaa
gtgtggaaaattaaagtagatttgagtgttttgaatatggatggtaatactttgggatgt
tgttcaattgcaaccttagcagcattgatgcattttcggcatccagatgttatgtcaact
ggagaaaaagtaattgtctattctagttcagagagagatcctataccattatcacttcat
catcatccagtaattgtaaactttgcaatttttgaaaaatatgatttcattattttggat
ccatcgtttttggaagacaaagtctgtgataataaattgtctatttgttttaacaaccac
agagaaatgtgtggtgttgacattgaaggatgtgcttctttaagtcaggatcttcttatg
aactgttccaatcaggcagcttccgtggctattaaacttgtagataaaataaaatcagct
atacaaattgatattaaaaatcgtagttctagtaaatcagttaaaggtctagaaccagct
gtttctgaagataatggtctaaagttatgtttgtctgataaattaaattttgtcggccca
tccaatcgagaaaataaaatagaagaaattgatgaaaaaatggttgttgatcaagaagtg
attaagataactgatggaactgcattcacaacttctcacaatttgcatcaaacaaattat
gtaaaacaaaatgaacgaaatgacaatttaattgtcattgatcctgaaagtagcgaatca
tcatcatcaagtgatgatagtgttgaagttgttagtcattataaattagatgatattaga
cctgttataggcaagtatgttgtttctgatgatgacaatagtgactcaggtaccatcatt
ttggattaa
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