Rhopalosiphum maidis (corn leaf aphid): 113553994
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Entry
113553994 CDS
T06065
Name
(RefSeq) TAR DNA-binding protein 43-like
KO
K23600
TAR DNA-binding protein 43
Organism
rmd
Rhopalosiphum maidis (corn leaf aphid)
Pathway
rmd03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rmd00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
113553994
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rmd03019
]
113553994
Messenger RNA biogenesis [BR:
rmd03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
113553994
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
RRM_1
TDP-43_N
RRM_7
RRM_PARP14_3
Nup35_RRM_2
WD-like_fungi
Itf52_C
Motif
Other DBs
NCBI-GeneID:
113553994
NCBI-ProteinID:
XP_026813418
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Position
2:complement(37466753..37470682)
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AA seq
403 aa
AA seq
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MSFVQVSETNDNDKEVVDLPLEKDGTLLLSTLHAQYPDACGLKYVAPDNGRTRALRLVDD
KLHPPTDDGWGDIVYFCSFNKDNGQKRKLNEEFESDVERASKEPKSEATSTAWKNRDLLV
LGLPWKTTDEDLESYFSKYGELRMAQIKKTTDGRSRGFGFIRFKEQESQVRSMLDSHVIN
GRRCEIKIPNIKDAFINEAPKKIFVGQLTESITQEDLEDYFKKFGDIVEVFVPRPFKGIA
FVSFTKPDAALTALDQDHTIKDIRLSVSVAMPKDKDQRSRGGRSSGGGGGSGGNPYGGNP
YSGRMRGSRDSYNSRDHYYDNGGWDDYDRGSYSDRYRNSRYDRKPYDSGRSYNSGQVWRK
NEYSDSSSVSQSKDVSGQFDPNLVAAVVEKTVRGVIGNMSKYE
NT seq
1212 nt
NT seq
+upstream
nt +downstream
nt
atgtcgttcgtccaagtatctgaaacaaatgacaatgataaagaggtggtggacttgccg
ttggaaaaagatggcaccctcttattgtctactcttcatgcacaatatccggatgcttgc
ggcttgaagtatgtagcaccggataacggccgaacccgagctcttcggcttgtcgatgat
aaactacatccacctactgatgatgggtggggcgacattgtatacttttgttcgttcaac
aaggataatggacagaaaaggaaattgaacgaagaatttgaaagtgatgttgagcgagca
tccaaggaacccaagtctgaggcaacatcaacggcttggaagaatcgagatttacttgtg
ctcggtttaccatggaaaacgactgatgaggacttagaaagttactttagtaaatacggt
gaactgcgcatggcacaaattaaaaagacaactgacggtagatctagaggttttggattc
atacgatttaaagaacaagaatctcaagtgcggtcaatgttagattctcatgtaataaac
ggaaggcgatgtgagattaaaatacctaacattaaggatgcatttataaatgaagcgccg
aagaaaatatttgttggtcaactgactgaaagtataactcaagaagatttagaagactat
tttaaaaaatttggagatattgttgaagtctttgttcctcgtccatttaaaggcattgcc
tttgtatcatttaccaaacctgatgctgcactcactgctcttgaccaggatcataccatc
aaagatattcgtctcagtgtgtctgttgctatgcctaaagataaagaccagaggtcacgt
ggtggacgtagtagtggcggcggtggcggaagtggtggtaacccctatggtggtaacccc
tatagtggtcgtatgagaggaagtcgagattcctacaatagtcgtgatcactactatgat
aatggtggttgggacgattatgaccgtggtagttattcagaccgctatagaaatagtcga
tatgatagaaaaccatacgatagtggccggtcatacaactcagggcaagtatggagaaaa
aatgaatactccgattcatcatctgtatctcaatctaaagatgtgagtggccagtttgat
ccaaatttagttgctgcagtagtagaaaagacagtgagaggagtaattggaaatatgagc
aaatatgaataa
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