Rickettsia massiliae AZT80: RMB_01040
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Entry
RMB_01040 CDS
T01758
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
rmi
Rickettsia massiliae AZT80
Pathway
rmi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rmi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
RMB_01040 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rmi03021
]
RMB_01040 (rpoB)
03400 DNA repair and recombination proteins [BR:
rmi03400
]
RMB_01040 (rpoB)
Enzymes [BR:
rmi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
RMB_01040 (rpoB)
Transcription machinery [BR:
rmi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
RMB_01040 (rpoB)
DNA repair and recombination proteins [BR:
rmi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
RMB_01040 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
DUF7225
Motif
Other DBs
NCBI-ProteinID:
AFB31131
UniProt:
H6QKX6
LinkDB
All DBs
Position
181844..185965
Genome browser
AA seq
1373 aa
AA seq
DB search
MVSLRDNIEAQPLSHNRRIRKNFGHINLVADIPNLIEIQKNSYEKNFLQLNIKDSERKNK
GLQSILNSIFPISDSSNIANLEFVKYEFDTPKYDVEECSQRSLSYAAPLKVTLRLSIWDI
DEDTGTREIKGIKEQEVYMGDIPLMTKNGTFIINGTERVVVSQMHRSPGVFFYHDEGKVH
SSGKLLYSARVIPYRGSWLDLEFDAKDVIYFRIDRKRKLYITTLLRAIGMSTEEIIKFYY
NSVTYKLVKNKGWAVKFIPQHITAHRLTSDLVDADTGNILLKAGQKITPRLAKKYFGEGL
NNILVAHETLIGKYLSEDLRDPASDEVLAKIGEMITADMLNVINDLKIKNVNVLVINPQS
GPYIRNTLFADKNQDHEAALCDIFRVLRPGEPANIEAAESLFYNLFFDAERYDLSEVGRI
KMNSRLELNISEEVTVLTIDDIKNIVRVLVELKDGKGIIDDIDHLGNRRVRSVGELIENQ
FRIGLVRMEKSVIERMSAGDVDTVMPHDLVNSKILVSVVKEFFNTSQLSQFMDQTNPLSE
ITHKRRLSALGPGGLSRDRAGFEVRDVHPTHYGRICPIETPEGQNIGLINSMATYARINK
HGFIESPYRRVKNGCVTDEVVYLSAIEEGKYKIGQANSKVNKDGKLQGEFINCRVEGGNF
VMVEPYEVDFIDVTPMQVVSVAASLIPFLENDDANRALMGSNMQRQAVPLIKTDAPFVGT
GVEGVVAKDSGASVLALHDGIVEQVDSNRIVIRTLEQKVDGSPSVDIYNLLKFQKSNHNT
CINQKPLVKVGHYVKKNDIIADGPSTDNGEIALGRNVLVAFLPWNGYNFEDSILISERIV
KEDVFTSIHIEEFEVIARDTRLGPEEITRDIPNVSEEALRHLDEVGIIYIGAEVKAGDIL
VGKVTPKSESPITPEEKLLRAIFGEKAFDVKDSSLHVPSGVSGTVVEVRVFSRRGVEKDQ
RAIAIEKQQIEKLAKDRDDELEIIEHFVFSWLEKLLVGQVIINGPKQVKVGQTITTEMLK
GLSKGQFWQITVEDANVMNEIEQIKTHYDKKKEALDKRFATKVEKLQSGDDLPQGALKVV
KVFIATKHKLQPGDKMAGRHGNKGVISRIVPEEDMPFLEDGTVVDIVLNPLGLPSRMNIG
QILETHLGWASINLAKKISTLVKEYKNKHIGIEQIKKFLIELYGENINSILERSEEEIIS
FCKKVSKGVHFATPVFDGAKVQDVKDMLKLAGQDPSGQVKLIDGRTGEYFDRLVTVGQKY
LLKLHHLVDNKIHSRSIGPYSLVTQQPLGGKSHFGGQRFGEMECWALQAYGAAYTLQEML
TVKSDDVNGRIKTYDSIVRGENNFESGIPESFNVMIKEFRSLCLNVKLEVTSS
NT seq
4122 nt
NT seq
+upstream
nt +downstream
nt
atggtttcattaagggataatatagaagcacaacccttgtcacataatagaagaataaga
aaaaatttcggtcacataaatttagtagcagatataccgaatttgattgaaattcaaaaa
aattcatatgagaaaaactttctacagttaaatattaaagattctgaaagaaaaaacaaa
ggtttacaatctatattaaactcaatttttcctatttcagattcctccaatattgctaat
ttagaatttgtaaaatatgaattcgatactccaaaatatgatgtagaagagtgcagtcaa
agaagtttaagttatgctgcccctcttaaagtgactttaagattaagtatttgggatata
gatgaggataccggtactagagaaattaaagggattaaagagcaagaagtatatatgggt
gatatcccattaatgactaaaaacggtacttttattatcaacggtacggaaagagtagtt
gtatcacaaatgcatcgctcacctggtgtattcttttatcatgatgaaggaaaagtccac
tcttccggcaagcttttatattctgctcgtgttattccatatagagggtcgtggcttgat
ttagaattcgacgctaaggatgttatttatttcaggattgatagaaaaagaaagctttat
attactactttgcttagagctataggtatgagtactgaagaaattataaaattttattat
aattcagtaacttataagcttgttaaaaataaaggttgggcggttaaatttatacctcag
catattactgcgcatcgtttaacaagtgatttagtagatgcagataccggaaatattcta
ctgaaagcaggacaaaaaattactccgcgtttggctaaaaaatattttggggaaggactt
aataatattttagtagctcatgaaactttaatcggcaaatatctatccgaagatttaaga
gatcctgcaagcgatgaagtattagcaaaaatcggtgaaatgattactgctgatatgcta
aatgtaattaatgatcttaaaattaaaaatgttaacgtattagtaatcaatcctcaatct
ggtccatatataaggaacaccttatttgctgataaaaatcaggatcatgaggcagcatta
tgtgatatttttagagtgctaagaccaggcgaacctgctaatatcgaagcggctgaaagc
ctgttttataatttattctttgatgcggaaagatatgatctttcagaagtcgggcgaata
aaaatgaattctaggttagagctgaatatttctgaagaagttacggttttaacaattgat
gatattaaaaatatcgtaagagttttagtagagcttaaagacggtaaaggtatcatagac
gatattgatcatttaggtaatagaagggttagatcggtaggtgaattgatagaaaatcaa
tttagaataggtttagtccgaatggaaaaatctgtaattgaaaggatgtcggcaggtgat
gttgataccgtaatgcctcatgatttagtaaattctaaaattttagtttcagtagtaaaa
gaattttttaatacctcccaattatcccaatttatggatcaaacaaatccattatcggaa
ataactcataaaagaaggctgtcggcactcggtcccggaggtcttagtcgagatcgagca
ggttttgaggtgcgtgacgtacatccgactcattacggtcgcatttgtcctattgaaaca
cctgaaggtcagaatatcgggttaattaactctatggctacttatgctagaataaataaa
cacggttttatagagagtccgtatagaagagttaaaaatggatgtgtaaccgatgaagtg
gtatatctttctgctattgaagaaggtaaatacaaaatcggacaagcaaattctaaagtt
aataaagacggaaagctgcaaggagagtttattaattgccgtgttgaaggcggtaatttt
gtaatggtagaaccgtatgaggtagacttcattgatgtgactcctatgcaggtagtatcg
gttgcagcctctcttataccgttcttggaaaacgatgatgctaaccgtgctttgatgggt
tcaaacatgcaaagacaagccgttcctttaattaaaacggatgcaccttttgtaggtacc
ggagttgaaggggtagtagctaaagattccggcgcgtcagtgcttgcattacatgacggt
attgttgagcaggtagattcaaatagaatcgtgattagaactctagaacaaaaagttgac
ggttctccttcggttgatatttataacttactaaaattccaaaaatccaatcataatact
tgtataaatcaaaagcctttagttaaggtcggtcattacgttaagaaaaacgatattata
gctgacggtcctagtacggataacggtgaaattgctttaggtaggaacgtgcttgtggct
ttcttaccttggaacggttataattttgaagattcaattttaatatccgaacgtatagta
aaagaggatgtatttacatctattcatattgaagagtttgaagtaatagctagagataca
cgccttggtcctgaagaaattacccgtgatataccgaatgtaagtgaagaagcgttgcgt
catcttgatgaggtcggaataatttatataggtgcagaagtaaaagccggtgatatttta
gtcggaaaagtaacaccgaaaagtgaatcgcctattactcctgaagagaagctactacgt
gctattttcggggaaaaagcttttgacgtaaaagattcatcgctgcatgtaccttccgga
gttagcggaactgtagtagaagtaagggtattttctcgtagaggtgtagaaaaagaccag
cgagctattgcgattgaaaaacaacaaattgaaaaattagcaaaagacagagacgatgaa
ttagaaattattgagcattttgtgtttagttggcttgaaaagcttttagtagggcaggtg
attattaacggtcctaagcaagtaaaagtaggacaaactattactactgaaatgctaaaa
ggcttatctaaagggcaattttggcagattaccgtggaagatgcaaatgtaatgaatgaa
atagagcagataaagactcattatgataagaaaaaagaggctcttgataaaagatttgct
actaaggtagagaaattgcaaagtggtgatgatttacctcagggagctttaaaagtagta
aaagtatttattgcaactaagcataaattacaacccggggataagatggcaggaagacac
ggaaataaaggtgttatttcacgtatcgtacctgaagaggatatgccgtttttagaagat
ggaactgtggtagatatcgttcttaatcctctaggtcttccgtcccgtatgaatatagga
cagattttagaaacgcatcttgggtgggcatcaataaatttagcaaaaaaaatatctacc
ttagtaaaggaatataaaaataaacatataggtattgagcagattaagaaattcttaatt
gaactgtatggagaaaatattaattctatacttgaaagatcggaagaagagattatctct
ttttgtaagaaagtaagtaaaggcgtacattttgcaactcctgtatttgacggagcaaaa
gttcaggacgttaaagatatgctaaagcttgccggtcaagacccttcaggacaagtgaaa
ttaattgacggtagaaccggtgaatattttgaccgtctagtaaccgttggacagaaatat
ttgctgaaattgcatcatttagtcgataataaaattcattcccgttctataggaccttat
agcttagtaacgcagcaaccgcttggaggtaagtctcatttcggcggacagcgtttcggg
gaaatggaatgttgggcattacaagcttacggtgcagcgtatacgttacaggaaatgtta
acggttaagtcggatgacgtaaacggtaggatcaaaacttatgattctatagtacgcggt
gaaaataattttgaatcaggcattcctgaatcatttaatgttatgataaaagaatttaga
tctttatgtcttaacgtaaagcttgaagtaacttcaagttaa
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