Rhipicephalus microplus (southern cattle tick): 119166991
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Entry
119166991 CDS
T07403
Name
(RefSeq) LOW QUALITY PROTEIN: tetratricopeptide repeat protein 37-like
KO
K12600
superkiller protein 3
Organism
rmp
Rhipicephalus microplus (southern cattle tick)
Pathway
rmp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rmp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119166991
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rmp03019
]
119166991
Messenger RNA biogenesis [BR:
rmp03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
119166991
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_16
TPR_14
TPR_19
TPR_8
TPR_CcmH_CycH
TPR_12
TPR_11
TPR_17
TPR_7
ARM_TT21_C
ANAPC3
TPR_4
TPR_10
HEAT_Nup120
Wzy_C_2
ARM_TT21
Coatomer_E
BTAD
DUF2989
HrpB1_HrpK
TPR_21
COG4_N
Motif
Other DBs
NCBI-GeneID:
119166991
NCBI-ProteinID:
XP_037274293
LinkDB
All DBs
Position
1:311577202..311653367
Genome browser
AA seq
1519 aa
AA seq
DB search
MDSKEVKQALKDAREAIRQKEFKAALKHCKSALKVDKECYMAWVFVGAAAQEIGQLEQSV
AAFKRACGISPDQILAWQGLCSLYEKHQSLGDFENDRHSVYMKLIELTQNDAAKQVEIAD
KLTSHYRDNGNDSKYLSTLEECVKIIGAKPETTKLWKSLVDFSSNKLVTYPKNHQELLVR
AYAHLAFSSETERPRRDALCRSYVDALCKTGHREEVISEALRFGESFPDSSVPMEVISGM
YVDMTLSSWEEPKPSTEIDKIEELTKSRPNLQVGWLAKATHLYASGNSKDALEALARAVQ
VGRSSREASLLLSLCSLKTHNFRKAEVHAQNGISLSPGASDWMSQKLLLCLAESLCAQQC
HEEASAALGKIAEEHARQPAVLWCFFETALQSGNFDKAEEVLSTLQEIAFESSRMKSAQA
RLLIQRDEIAEAQEILTSFEDKSPEATHLLAFIHWKLGQYDEAVPIFLEAARLDPHNYRN
FLYLGRHYFYHLKDVQKAVRCFQKAFQLNQASEEAGSLLSDALCDLGQHEQNVKFLEAIT
SQLPVKRAKWAWVRLGLQQLRLGRATEAVQSLQNSLRADPSDKSCWECLGEAYLMRESLG
AALLCFKKCLDADPKDLFSLYQTAAIKSRQGLHKEAADNFQEALEVNSEYIPAIKGLAEA
RLALVREHLEQGLCGLGLQYCQQALDTVARALELQGRLVCLWKLAGDICLVPAVYGINWV
SLKLPTSLLQGELDSGQEQLTKASQKCYMTAIRMKPRLASLWHDLGLALWLEARLKKGSF
DKALASVRNAVTLKPGCFAYWNSLGVLAVSSGAENYGLAQHCFIKSLELENNNLYAWTNL
GALYLQAGNVQLAHQAFAKAQSVEPTAMRPWVGQAFIAEKVHHHDTIDLFRHCMGLGNHV
SNAVINVQCQFYSXMSDVALSTKHGRNILVVASDALSRTVDLEGALDPAALNMLGILLER
QGRLRSARDAYKKALTLPGQNDDNINCIRVNLARVLCTLGCYEEAIQLCLQTGSHSWDCA
LHSWFVLRKAGXTSEALKVYEEALSKSPPEKKVEVELGMAMVTLKASGAAAAKDFLQNRL
TSVPQSHEALEALCCLSMLAGDRSSCRSSTQKLMTLSKKSVALHERTTSLLCSQQLMKQY
RKAPTARQARRILSSAVHIHPDKSSLWSALTQALLLEKKPSALCCALAGLVLGECSPRHM
TMVVLARLMQGKAKEALRAAQKMVYLYPDSHSGWVLLGLAISECRIVADKALQHDRFLLG
ADTLWKLWSNLIQVQYACVHQRWQKVSELVPLVLWGFAGSPLVSKSLNVLQAISEFLMKT
SRLEKASLSSIQNTVECEDIAPGWQMISKLLQRTEDYSGAIESLERAKKYDGMEGKILEL
ELCQAWLALRSAKVDSQQRDGMLKAALGYLNTALRTNPRCRAGHMILGVWALENNNPRLA
KKSLERVMRFHDGGTSWIQSATVKLLFLHYLERKDAEALKKLLPQVDEQLDLQSLMSEEN
KEQLISMGVLFNASELKKH
NT seq
4560 nt
NT seq
+upstream
nt +downstream
nt
atggattccaaagaagtgaagcaagcgctgaaggatgcaagagaagcaatcagacaaaag
gagttcaaagctgctctcaagcactgcaagagtgctttgaaagtagacaaggaatgctac
atggcttgggtgtttgttggagctgcagcacaagaaattggccagctagagcaatctgtt
gctgcatttaagagggcttgtggcatctcccctgaccaaattctggcttggcagggcctt
tgttctctgtatgagaagcaccagagcctgggagatttcgaaaatgaccgccattctgtg
tacatgaagctcattgagctcacccaaaatgatgctgcaaaacaagttgagatagctgat
aaactcaccagccactacagggacaacggaaatgatagcaagtacttgagtacactggaa
gagtgtgttaaaataataggtgccaaaccagagaccactaagttgtggaagtctcttgtg
gatttcagcagtaacaagctggttacctaccccaagaaccatcaagagttgcttgtcaga
gcctatgcacacctggctttctcaagtgaaactgaacgtcctcgcagagatgcactgtgt
cgatcctatgtagacgctttgtgtaagactggtcacagggaggaggtaattagtgaggcc
ctaaggtttggggaaagttttccagattcgtcggttcccatggaagtcatcagtgggatg
tatgtggacatgactcttagcagttgggaagaaccaaagccttcaacagaaattgacaaa
atcgaggaactcaccaaaagccgcccaaatctgcaggttggctggctagcaaaagcaacc
cacctatatgcttctggaaattccaaagatgctctcgaggcactggcaagagctgttcag
gttgggcgtagctcgagagaggccagcctgttgctttccttgtgcagcctgaagacgcac
aatttccgcaaggctgaggttcatgcccagaatggtatttctttgtcaccaggagcaagt
gactggatgtcccaaaaactccttctgtgtttggctgagtctctctgtgcacagcagtgt
catgaagaagcatcagcagctttaggaaagattgcagaggaacatgcgaggcagcctgca
gtcttgtggtgcttctttgaaactgctttgcagtctggcaactttgataaggcagaagag
gttctcagcactttgcaagagattgcttttgaaagctcaagaatgaaaagtgcacaagcc
aggctgcttatacagcgtgacgaaatagctgaggcacaggaaatccttacaagctttgaa
gacaaatccccagaagccacccatctgcttgcgttcattcactggaaacttggccaatat
gacgaagctgtgcctatctttttagaagcggctcgcttggatcctcacaactaccgaaat
ttcttgtatcttggaagacactacttctatcaccttaaagatgttcagaaagctgtaagg
tgttttcagaaagcttttcaactgaaccaagccagtgaagaagccgggtctctcctgagt
gatgcgctgtgtgacctgggtcagcacgaacaaaatgttaaattcttggaagcaattaca
agccaacttcctgtaaagagagcaaagtgggcatgggtaaggcttggtctccaacaatta
agacttggcagagctacagaagcagtgcagtctctacagaactcgcttcgagctgatccc
agtgacaagtcttgctgggaatgcctaggagaagcgtacctcatgcgggagagcctcggt
gctgccctcctgtgcttcaagaagtgccttgatgcagatcccaaagatctcttttcgcta
tatcagacagccgcaatcaagtctcgtcaaggcttgcacaaggaagctgcagataacttt
caagaagcccttgaagtcaactcagagtacattcctgcaatcaaaggtctggcagaagcg
aggctagcactcgtgcgagaacacttggagcaagggctctgtggtcttggcctgcaatac
tgccagcaggctttggacaccgttgctagagccttggaacttcaaggtcggctcgtatgt
ctgtggaagcttgcgggtgacatttgcttggtccctgctgtgtacgggatcaactgggtc
tctctgaagcttcccacttccttgttgcaaggggaactggatagtggccaggaacagctt
acaaaggcatcacaaaagtgctacatgactgctattcgaatgaagccacggctggcgtct
ctgtggcacgacttgggcctggccctgtggttggaagcacgactcaagaagggaagtttt
gacaaggctttagccagtgtgcgcaacgctgtcactctgaaaccaggctgctttgcttac
tggaacagtcttggggtactggctgtctcctcaggtgcagagaattatggtttggcccaa
cattgctttataaaatctctggagttggagaacaataacttgtacgcttggacgaatctc
ggtgccttgtaccttcaggctggcaatgtgcagttggcgcaccaagcttttgcaaaagcc
cagtctgtcgaaccaacagcaatgcggccgtgggtaggacaggcattcattgctgaaaaa
gtacatcaccacgacactattgacttgttcagacactgcatgggacttgggaatcacgtg
agtaatgcggttattaatgtgcagtgccagttttactcatgaatgtcagatgtagcactt
agcactaagcacggcaggaatatcttagtggttgcctctgatgctctttcacgcactgta
gatttggaaggagccctagatcctgcagcattgaacatgctaggaatactgctagaacgc
caaggacgactaagaagtgcacgagatgcctataaaaaggcgttgacattacctggtcaa
aatgatgataatatcaattgcattcgcgtgaatctggcacgtgtactttgcactctgggt
tgttatgaggaggccattcagctctgcctgcaaacagggtcgcactcatgggactgtgct
ttgcattcttggtttgtgttacggaaagctgggtgaacttccgaagccctaaaagtgtat
gaggaagctctgtcgaaaagtccgcccgagaagaaagtggaagtggagctaggcatggcc
atggtgaccttgaaggcttctggagctgcagctgctaaggatttcctacaaaacaggtta
accagcgttccgcagtctcatgaggctctggaggctctctgctgcctgtccatgcttgct
ggagacagaagttcttgccgcagttccactcaaaagctcatgacgctgagtaaaaaaagc
gtggcacttcacgagaggactacatcattgctctgcagccagcagttgatgaagcagtat
cgcaaggcaccgactgctcgccaagcccgtcgaatacttagtagtgctgtgcatattcac
ccagacaagagctccttgtggtcggcgttaacacaggccctgctgttagaaaagaagcct
agcgctctctgctgtgccctggctggtctcgttctcggagaatgctctccacgacacatg
accatggttgtgctggccaggctgatgcaaggaaaggccaaggaggccctgagagctgct
cagaagatggtttacctctatcctgactctcactcaggctgggtgcttcttggtcttgcc
ataagcgaatgccgaatagttgctgacaaagctctgcagcatgatcgctttctactcggt
gccgacactttgtggaagctttggtccaacctgattcaagtgcagtacgcctgtgttcac
cagcgatggcaaaaagtgtcagagctggtgcctttggttctgtggggattcgctggaagt
ccacttgtatccaagtcattgaatgtgctacaggccatttcagaatttctgatgaaaact
tcacgtctggagaaagcttctctgagctctattcaaaatacagttgaatgtgaggacata
gcccctggatggcagatgatttcaaagctactccaaagaactgaagactatagtggtgcc
attgagtcacttgagagggcaaagaagtatgatggcatggaaggaaaaatcctggagctg
gaactgtgccaagcatggctggctttgcgttctgcaaaggttgactctcagcaacgtgac
ggtatgcttaaggctgccctaggatatctcaacacagcactgagaacgaatcccagatgc
agagcaggccacatgattcttggtgtttgggcactggagaataacaatcccaggctagcg
aagaagagcctcgagcgagtgatgagatttcacgatggcggaacctcctggattcagtct
gccacagtgaagctgctgtttttgcactacttggaaaggaaagatgctgaggcactgaag
aagctgctacctcaagtagatgagcaactggacttgcagtcactcatgagtgaagaaaac
aaagagcagctcatttcaatgggcgttttatttaatgcttcggaattaaaaaagcattga
DBGET
integrated database retrieval system
