Rhipicephalus microplus (southern cattle tick): 119176451
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Entry
119176451 CDS
T07403
Name
(RefSeq) LOW QUALITY PROTEIN: CCR4-NOT transcription complex subunit 1-like
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
rmp
Rhipicephalus microplus (southern cattle tick)
Pathway
rmp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rmp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119176451
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rmp03019
]
119176451
Messenger RNA biogenesis [BR:
rmp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
119176451
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
119176451
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
NOT1_connector
ARM_Cnot1
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
119176451
NCBI-ProteinID:
XP_037283630
LinkDB
All DBs
Position
8:complement(107837269..108067964)
Genome browser
AA seq
2385 aa
AA seq
DB search
MNLDSLSFALSYISYSVPSLTKKNFKSSGQEISRLIALHGFEAERHLLRCLFSHVDFSGD
GKSSGKDFHQTQYLIQEFSSVLSKPNFVSTVCFAIENPLHYQKSLRPSALLLPHISHVLR
LNRVQEVVLGTCLLYSSSADLCNCATQFIRLKLPDLLQSYTDSDLSTQESDLQDCSPEVL
HLLLVDLLNKNSEHFGVTNELKESFFENLRKDFPRDRVPVVLAPLLYGEACDVLLVKGMT
EPASNMSKAMELSPIDLIKELGYGFTASVEECRQSLVQVGLRDPGPSMVARVLSMMANTH
TGLSEPLQGLGSSATSPWNADKDANTSHITWNIDIFIQALYDLVPTLSWKEVVSELDFPG
FFVKDRQGLKLLWHGLCRGLGSEPFPTDRLYRVWRNPDSQLSLFHQIMKNSDIVCLIDYK
YRPVSMDILKALPEDDNRDIANWKSLDLVETLLNLSEKVQYSSHVHDLFKYPVQHCPDLL
MLGLLQAMGPMQGFRQELLTNLVFVFLSNHPNSAIVLQAAWNVQNHANVVRPLIMHTMAD
WYMRGGESEQGRLSRILDVAQDLKALSVLLSSNSFPLVIDLACLASRREYLKLDKWLTDK
IFEHKEAFIQACVNFLKRRCPQIMGGIVKEENLPKSAQLPAETLATMLSCLQQYAGSVSQ
ELSETILTMSGNCSILLNKPRQPPPGVVKTPRGLEPAFSAASLNPSQAPQQQQQQQQQQQ
LEVLSSLGSLSMNGPTTAQAPPIGVGGGPPLFGSSFATPGSPAKLFGAPPSATGSTGPPP
PAQGTGFSNVMPSLGDVASILPEMNQPVSKEIEDEANGYFQRIYNHPPHPTLSIAEVLDM
LKRFQESPIKSERDVFNCMIKNLFEEYRFFPQYPEKELIITAQLFGGIIEQSLVTYMALG
LALRYVLDALRKPFGTKMYYFGITALDQFKTRLKDYPQYCQHLASIPHFKDFPEHLREYV
DCGARSQEPVNRPQGQTLPHNLAMLAQGLNPAGAPQSSAVRAAPAAVPTSSAGVTATTVV
LAKSTTVGGKPSIANPTNIDTLLVATQKDDKLLIPPEAVQDKVAFIINNLSQMNLPQKTE
EFKEVVKEEYWPWFAQYIVMKRASIEPNFHTLYANFLDTVKNEELSVLVLRETFRNIKVL
LTSDKAIANFSDRSLLKSLGHWLGMLTIAKNRPVLQADIDLKSLLIEAYHKGQQELLYVV
PFIAKVLESSAKSRVFKPPNPWTMGVLDVLSELHREPELKLNLKFEIEVLCKTLNLDIND
FKPGIILKDQELRKRLDPQLSPRHKVDSPALPPSVVPPTAAPPSAAPPPLAPQVPSGVVT
AAAGPGIPVAQVGLPPPQPEEAPATLGVSGTSIGAFPQPQFSYQEINVLSMTTLAQHIQI
NSQLPLFQAHPHLKQYVRTAIDRAIQEWIMPVVERSLKIALTTCDQIVRKDFALDPEESR
LRAAAHHMVRSLTAGMAMITCRDPMLVTISNNLKAAFHTALRLQGASLPQKELLEQATTV
VAQENVELACCFIQKTAIEKAIPEIDKKLSQEYEFRKSARSENRRYCDPVVLTYQAERMP
EQIRLKVGGVTPQQMAVYEEFARNIPGFQPISERDQPSLFIPKPVVRQTGFASSVDDMTN
LYDKIISELEQQVHGLLGTVVPSNPQVAALHLLHEAVLVARNSREAVTAMALLQKTVESM
AEGLSHSLGADPETALRFREAHLAVLKTLAEGYGHPWAAKHITRFLLELREEIRWNVDVV
DPLVRSGLLVLATFDLHLAQSMENGMNYPAVDFAKQLVRLYFSEARHGDYNLSESDLCNT
LEALVRINAHSRQPQEGLSQVMEMLRSGSGGGAVEYGGVPSSGPMSMMHSGISQAREYDD
PPGLHEKTEFLLREWVSMYNAPTAGKDSTKAFQIFVQQMNVQGILKTDDLITRFFRLSTE
MCVEHCYRALLDQTPNNATIVRSKCFNSLDAYMRLIALLVKLSGDASNPTTKVNLLNKVL
GIVAGVLLQDHESRGLEFQQLPYHHIFMMLFLELSAXEAVLEAIGFHVLMAFCNTLHVTQ
PCKAPAFAYSWLELISHRVFLGXLLALTPQQKAWGMFAPLLNDLFKFLAPLLRIVDLENP
IQLLYKGTLRVLLVLLHDFPEFLCDFHYDFCDLIAANCIQMRNLILSAFPRHMRLPDPFT
PNLKVEVLPEITQAPRVLTNFASVIQPQSFKKDLDSYIKTWGPVTFLSELHSNLQETTEP
GINYNVPLMNALVLYVGTQAIAYIQSKSPIPSMSTITHSSHMDIFQNVAVDLNTEGRYLF
LNAIANQLRYPNSHTHYFSCTLLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLVTF
IGLIKNPTFKFWSHEFVRCAPEIEKLFESVARSCMXQKSPTEPSG
NT seq
7158 nt
NT seq
+upstream
nt +downstream
nt
atgaacctagattcgttgtcttttgctttgtcttatattagttattctgtgcccagcttg
acaaagaagaacttcaagtccagtggtcaagagatatcccgccttatcgccctgcatggg
tttgaggcagagcggcatctgcttcgttgccttttttcccacgttgacttcagtggtgat
ggtaaaagtagtggaaaggacttccatcagacccagtatttgatccaggagttcagctct
gttctttccaagcctaattttgtgtcaactgtgtgttttgctattgaaaatcctcttcat
tatcaaaaaagtcttcgaccgagcgccttgttacttccccacatcagccatgtactacgg
ttaaatcgtgtgcaagaagttgttcttggcacttgtttgctttattcgtccagtgcagat
ctgtgcaattgtgctacacagtttatccgactgaagcttcctgaccttttacaatcttac
acagactcagacttatccacgcaagagagtgatcttcaggactgtagtcccgaggttctt
caccttttgcttgtagatttattaaacaagaactctgagcactttggagtcactaatgaa
ctgaaggagtctttttttgagaatctccgtaaagattttcctcgggatagagtgccagtt
gttttagcaccactgttgtatggtgaagcatgtgatgtgctgctggtaaaaggaatgact
gaaccagcctcaaacatgtcgaaagcaatggaattgtcacctattgatctcatcaaagaa
ttgggttatggctttactgcaagtgtggaagaatgtcgtcagagcttggtccaagtgggt
cttcgagaccctgggccaagcatggtggccagagtgctgtccatgatggccaacactcac
acgggtctttctgagccactgcaaggccttgggtcatcagcgacgtctccttggaacgcc
gacaaagatgccaacacaagccatattacctggaatattgacatattcattcaggcactt
tatgacctggtacctacactgagctggaaggaagtggttagtgaactggactttccaggc
ttttttgtgaaggaccgtcaaggcctgaagctcctctggcatggcttgtgtagagggctc
ggtagtgagcccttccctactgaccgcttgtacagagtttggaggaacccggactcccag
ctgtcgttattccaccagattatgaaaaattctgacattgtttgcctgatcgactacaag
taccggccagtgtcgatggatattttgaaggcacttcctgaagatgacaacagagacata
gccaattggaagtctttggatcttgtagaaactcttctgaacttgtcagagaaagtgcag
tactcatcacatgtacatgacttgttcaaatatcccgttcaacattgtcccgacttgctg
atgcttgggcttctacaagctatgggacccatgcaagggtttcgtcaggaactgttgaca
aaccttgtatttgtgtttctcagcaatcatccgaattctgcaatagtgttgcaggcagct
tggaatgttcagaatcacgcaaatgtcgttcggcccttgataatgcacaccatggctgac
tggtacatgcgtggtggagaaagtgagcaagggcgtttgtcccgaattctggatgttgct
caggacctaaaggccctctctgtgctgctaagcagcaactcctttcctctggtgattgac
ttggcctgcttggcctcacgcagagaatatctcaagcttgacaagtggcttactgacaag
atcttcgagcacaaggaggcattcattcaagcctgtgtcaatttcctgaagcgtaggtgt
ccccagattatgggtggcatagtcaaggaggagaatttgccgaaaagtgctcaactacca
gctgaaacattggctactatgctttcctgtctccagcaatatgcagggagtgttagtcag
gagctttcggaaactatcttgacaatgtccggaaattgtagtattctgctaaacaagcca
cgccaaccaccacctggtgttgttaaaacacctaggggcttggagccagcattttcagcc
gccagcctcaatccatctcaagctcctcagcagcaacaacagcagcagcaacagcagcag
ctggaagtcctcagctctttaggaagcctttccatgaatggcccaactacagcgcaagcc
ccaccaattggtgtgggagggggcccacccctatttggcagttcatttgccactccaggc
tcaccagccaagctttttggtgcacccccaagtgcaactggttcaactggaccaccaccc
ccggctcaaggaactggcttttctaacgtcatgcccagccttggagatgtagcaagcatc
ctccctgaaatgaaccagcctgtgtcaaaagaaattgaagatgaagctaatggatatttt
caacgcatttacaaccatcctccacatccaactttgtccattgctgaggttttggacatg
ctgaaacgtttccaagagtctccaatcaagtctgagagggatgtgttcaattgcatgata
aagaacctgttcgaagaatacaggttctttccacagtatcctgagaaagagctcattata
acagcacaacttttcggaggcattattgaacagagtctcgtaacatacatggctttgggt
ttggcccttcgctatgttttggatgctctccgcaaaccgtttggtaccaagatgtactac
tttggcatcactgctctggaccagttcaaaacaagattgaaagactacccacagtattgc
cagcacttggcatccattccacatttcaaggactttcctgaacatctaagagagtatgtt
gactgtggtgcacggtctcaggagcctgtgaatcgtccccagggtcagaccttgcctcac
aatctggctatgttggctcagggtctaaacccagcaggagcaccccaaagttcagcagta
cgagcggcacctgctgcagtgcctacgtccagtgcaggtgtgacagctaccacggtagtg
ctcgcaaagtccaccacagttgggggaaagccatccattgccaaccccacaaacatagat
acattgctggttgccactcaaaaggatgataagctgctaatacctccagaagctgtccaa
gacaaagtggcctttatcatcaacaatctttcccagatgaatcttccccagaagactgag
gagttcaaggaggttgtgaaagaggaatattggccttggtttgcccagtacatagtgatg
aagagagcatctattgaacctaattttcatactctgtatgccaattttctggatactgtc
aagaatgaggagctttcagtgcttgtgctccgggaaacatttcgcaatatcaaagttctt
ctgaccagtgataaggcaatagccaatttttctgaccgatctttgttgaaaagcctcggt
cattggctaggaatgttaaccatagcaaaaaataggcctgtgcttcaagctgacatagat
ctgaagtcgctacttattgaggcgtaccataaaggtcaacaggaactgctttatgtggtg
ccatttattgccaaagtcctggaatccagtgcaaaaagcagggttttcaagcctcccaac
ccctggactatgggagttttggatgtactgtcggagttacaccgagaaccagagttgaag
ctgaacctgaagtttgaaattgaggttttgtgcaagacattaaacctggacatcaatgac
ttcaagccaggtataatactgaaggaccaagagcttcgcaaacgattggacccacagcta
tctcctcgacacaaggttgatagccccgcactgcccccttctgtggtacctcccacggca
gcaccaccttctgctgcccctccacctttggcaccccaggtaccttcaggggttgtgacc
gcggcagcaggtcctggaatacctgtagcacaggtggggttgccgccaccacagcctgag
gaggcacctgcaacattgggtgtatctgggacatcaataggcgcttttccacagccgcaa
ttttcctaccaggaaatcaatgtgctttctatgaccactttagctcagcacatccaaata
aacagccagcttccactatttcaggcacatcctcatttgaaacagtatgtgcgcacagcg
atcgatcgtgcgatccaggaatggattatgccagtagtggaacgctctctgaaaattgct
cttactacatgtgatcaaattgttcgaaaggactttgctttggatcctgaagagtcccgg
ttgcgtgcagctgcccaccacatggtgcggagcctgacagctgggatggctatgattact
tgcagagatcctatgttggtgaccatcagcaacaatctgaaagctgcctttcacacagca
ctgaggctgcaaggagcaagcctaccacaaaaggagcttttggagcaggcaaccacagta
gtcgcccaagagaatgtggaactggcctgttgtttcatccaaaagactgccatcgagaaa
gccattcctgagattgacaagaagcttagccaggaatacgagttccgcaaaagtgctcgc
agtgaaaaccggcgctactgtgaccctgtcgtcttgacctaccaagctgagcggatgcct
gagcagattcgactcaaggttggtggtgtgactcctcagcaaatggcagtatatgaggaa
ttcgcccggaacatccctggtttccaacctatttctgaaagagatcagccttccttgttt
attccaaagccggtggtgcgacaaactggctttgcgagttctgttgatgacatgacaaat
ttgtatgataagatcatttctgagttggagcagcaggttcatggactcttaggtactgtt
gtgccctcaaacccacaagtggcagccctccatttgctacatgaagcagtgctggtggca
cggaactcaagagaagctgtcacagccatggctttgcttcaaaagacagtggagagtatg
gctgaagggctcagtcattcgctgggagcagaccccgagactgcgctgcgctttcgtgag
gcccacctggcagtgctgaagacactggccgagggttacggtcacccgtgggcagccaag
catataacgcgcttccttctggagctgcgcgaagagatacgttggaatgtggatgtagtg
gaccctctggtgcgatcaggcctgctggtgttggccacttttgacttgcatctggctcag
tccatggagaatggcatgaactacccggcggtcgactttgccaagcagttggtgcgcttg
tacttctccgaagctcgtcatggtgattacaacctttcggagtccgacctgtgcaatacc
ttagaggcacttgtgcgcatcaatgctcactcgaggcagccacaagagggattatcccaa
gtgatggagatgctgcgtagtggaagtggcggaggcgcagtggagtacgggggtgtgcct
agcagtgggccgatgtcaatgatgcactcgggcatcagccaggcacgcgagtacgatgac
ccacctggcctgcatgaaaagacagaatttctgctgcgagagtgggtatcgatgtacaac
gctcctactgctggcaaagattctaccaaggcgttccagatatttgtgcagcaaatgaac
gtgcaaggtattttgaagactgacgacttgatcacccgattctttcgtctgagcacagag
atgtgtgtggagcattgctaccgggccctcctggaccagacacccaacaatgcaaccatt
gttcgctcaaagtgcttcaactctcttgatgcatacatgcgcctgatagccttgctggtc
aagctcagtggagatgcatccaacccaacaaccaaagtcaacctcctcaacaaggtgctt
ggcattgtggcaggtgtattgcttcaggatcatgaatcacggggcctggagtttcaacag
cttccttaccatcacatttttatgatgcttttccttgagctgagtgcantcgaggcagtt
ctggaagccattggctttcatgtgttgatggccttctgcaatactctgcatgttacgcag
ccatgcaaagctcctgcttttgcttactcctggctagaactcatctcacaccgtgtgttt
ttgggcnagctccttgctctgactccacaacagaaagcatggggaatgtttgccccgctg
ctcaatgacttgttcaagtttctggctcccttgcttcgcattgtggatcttgagaacccc
atccagcttctttataagggcactttgcgggtgctgctggtgctgctccatgactttcca
gagtttctgtgcgattttcactatgatttctgtgacttgattgcagcaaactgtattcaa
atgcgcaatctaatccttagtgcatttcctcgacacatgcgactgcctgatcctttcaca
ccgaacctgaaggtggaagtactgccagaaatcacgcaagcccctagagtcctcaccaat
tttgcttcagtcatccagcctcagagcttcaaaaaggatttggactcctatatcaaaaca
tggggtcctgtgacatttctatcagaacttcacagcaatcttcaggaaacaactgaacct
ggcattaactacaatgtgccattgatgaatgcactggtgctctatgtgggcacccaggct
attgcttacattcaaagcaaaagcccgattcccagcatgagcacaattactcattcatcg
cacatggacatattccagaacgtggctgttgacttgaacactgaaggacggtaccttttc
ttgaatgcaattgcaaaccagctacggtacccaaacagtcatacccattacttcagctgt
acgctgctgtacctgtttgctgaagcgaacactgaagccatccaagaacaaataacaagg
gtattgctcgagcgcctcattgtgaatcgtccacacccatggggtctcctagtaaccttt
atcggcctgatcaagaacccaacattcaagttctggagccatgaatttgtgcgttgtgct
ccagaaattgaaaagctgtttgaatctgtggcaagatcttgcatgtagcagaagtcaccc
acagaaccttctggttag
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integrated database retrieval system
