Rattus norvegicus (rat): 117258
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Entry
117258 CDS
T01003
Symbol
Cntn1
Name
(RefSeq) contactin-1 precursor
KO
K06759
contactin 1
Organism
rno
Rattus norvegicus (rat)
Pathway
rno04514
Cell adhesion molecule (CAM) interaction
rno04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
117258 (Cntn1)
04517 IgSF CAM signaling
117258 (Cntn1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
rno04515
]
117258 (Cntn1)
00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
rno00537
]
117258 (Cntn1)
Cell adhesion molecules [BR:
rno04515
]
Immunoglobulin superfamily
Contactins
117258 (Cntn1)
Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
rno00537
]
Others
117258 (Cntn1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_3
I-set
ig
Ig_2
fn3
V-set
FN3_DSCAM-DSCAML_C
Ig_5
Pur_ac_phosph_N
Sp38
Fn3_VIN3
C2-set_2
Motif
Other DBs
NCBI-GeneID:
117258
NCBI-ProteinID:
NP_476459
RGD:
621300
Ensembl:
ENSRNOG00000004438
UniProt:
Q63198
A6K7R9
LinkDB
All DBs
Position
7:125142638..125440397
Genome browser
AA seq
1021 aa
AA seq
DB search
MKTPLLVSHLLLISLTSCLGEFTWHRRYGHGVSEEDKGFGPIFEEQPINTIYPEESLEGK
VSLNCRARASPFPVYKWRMNNGDVDLTNDRYSMVGGNLVINNPDKQKDAGIYYCLASNNY
GMVRSTEATLSFGYLDPFPPEDRPEVKVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVF
ITMDKRRFVSQTNGNLYIANVESSDRGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPY
PADIVVQFKDIYTMMGQNVTLECFALGNPVPDIRWRKVLEPMPTTAEISTSGAVLKIFNI
QLEDEGLYECEAENIRGKDKHQARIYVQAFPEWVEHINDTEVDIGSDLYWPCVATGKPIP
TIRWLKNGYAYHKGELRLYDVTFENAGMYQCIAENAYGTIYANAELKILALAPTFEMNPM
KKKILAAKGGRVIIECKPKAAPKPKFSWSKGTEWLVNSSRILIWEDGSLEINNITRNDGG
IYTCFAENNRGKANSTGTLVITNPTRIILAPINADITVGENATMQCAASFDPSLDLTFVW
SFNGYVIDFNKEITNIHYQRNFMLDANGELLIRNAQLKHAGRYTCTAQTIVDNSSASADL
VVRGPPGPPGGLRIEDIRATSVALTWSRGSDNHSPISKYTIQTKTILSDDWKDAKTDPPI
IEGNMESAKAVDLIPWMEYEFRVVATNTLGTGEPSIPSNRIKTDGAAPNVAPSDVGGGGG
TNRELTITWAPLSREYHYGNNFGYIVAFKPFDGEEWKKVTVTNPDTGRYVHKDETMTPST
AFQVKVKAFNNKGDGPYSLIAVINSAQDAPSEAPTEVGVKVLSSSEISVHWKHVLEKIVE
SYQIRYWAGHDKEAAAHRVQVTSQEYSARLENLLPDTQYFIEVGACNSAGCGPSSDVIET
FTRKAPPSQPPRIISSVRSGSRYIITWDHVVALSNESTVTGYKILYRPDGQHDGKLFSTH
KHSIEVPIPRDGEYVVEVRAHSDGGDGVVSQVKISGVSTLSSGLLSLLLPSLGFLVFYSE
F
NT seq
3066 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaccccattgctggtcagtcatctcctgctaatctccttaacatcctgtctagga
gagtttacatggcacagaagatatggtcatggagtttctgaggaggataaaggatttgga
cccatttttgaagagcaaccaatcaataccatttacccagaagagtcactggaaggcaaa
gtgtcgctcaactgccgggcacgggcaagcccatttccggtttacaagtggagaatgaat
aacggggacgttgacctgacgaacgatcgatacagcatggtcggagggaaccttgttatc
aataaccctgacaaacagaaagacgcaggaatatactactgcttggcgtccaacaactac
gggatggtcagaagcaccgaggccaccctgagctttgggtatcttgacccctttcctcct
gaggatcgtcctgaagtgaaggtgaaggaagggaagggcatggtgcttctctgcgaccct
ccctaccacttcccagacgatcttagctaccgctggcttctgaatgaatttcccgtcttt
atcacaatggataagcgaagattcgtgtctcagaccaacggtaatctctacatcgcgaac
gttgagtcttctgatagaggcaactattcctgcttcgtgtccagcccttctattacaaag
agcgtgttcagcaaatttatacccctcattccgatacctgagcgaacaacgaagccatat
cctgctgacattgtagtgcagttcaaggacatatacaccatgatgggccaaaatgtgacc
ttagagtgcttcgctcttggaaaccctgttcctgatattcggtggcggaaggtgctagaa
cccatgcctaccacagctgagatcagcacctcaggggctgtcctcaagatcttcaacatc
cagctagaagatgaagggctctacgagtgcgaggctgagaacattaggggaaaggacaag
caccaggcaagaatttatgttcaagcatttcctgaatgggtagagcatatcaatgacact
gaagtggacataggcagtgacctctactggccttgtgtggccacagggaagcccatccct
accatcaggtggctgaaaaatgggtacgcgtatcacaaaggggaactgaggctgtatgac
gtgacttttgaaaacgccgggatgtaccagtgcatagcagaaaacgcgtatgggaccatt
tatgcaaatgctgaactcaagatcctggctttagctccaacttttgaaatgaatcccatg
aagaagaagatcctggctgcgaaaggaggaagggttatcattgagtgcaaacccaaggct
gcaccaaaacccaagttttcatggagcaaagggacagagtggcttgtcaacagcagcaga
atactcatatgggaagatggtagcttggaaatcaataatattacaagaaatgatggagga
atctatacatgctttgcagaaaacaacagagggaaagctaatagcaccgggactctggtg
atcacaaatcccacacgaatcattttggccccaatcaatgctgatatcactgttggagaa
aacgctaccatgcagtgtgctgcctcctttgatccttccttggatctcacgttcgtctgg
tctttcaatggctacgtgattgactttaacaaggaaattacaaatattcattaccagagg
aattttatgctcgacgccaatggggaactgctcatccgaaacgcgcagctgaaacacgca
ggacggtacacgtgcacagcgcagacaatcgtggacaattcttcagcttcagctgacctt
gtcgtacgaggccccccaggccctccaggtggcctgagaatagaagacatcagagctacc
tctgtggcactgacttggagccgtggttcagacaatcacagccctatctctaaatacact
atccagaccaagacgattctctcagatgactggaaagacgcaaagacggatcccccaatc
attgaaggaaacatggagtcagcaaaagcagtcgatttgatcccatggatggagtacgaa
tttcgagtggtagcaaccaatactttggggactggagagcccagcataccctcaaacagg
atcaaaaccgatggcgctgcaccaaatgtggctccctcagacgtaggtggtgggggcgga
accaacagagagctgacaataacgtgggcgcctttgtccagagaataccattatggtaac
aattttggttacatagtggcattcaagccattcgatggagaagagtggaagaaagtgacc
gttaccaatccggatactggccgctacgtccacaaggacgaaaccatgaccccttccacc
gcgtttcaagtcaaagtgaaggcattcaacaataaaggagacgggccctacagcctcata
gctgtcatcaactcagcacaagacgctcccagtgaagcccccacagaagtaggggtcaaa
gtgctatcgtcctctgagatctctgtccattggaagcacgttctagagaagattgtggaa
agctatcaaattcggtactgggccggtcacgacaaagaagcagcggcgcacagagttcaa
gtcaccagccaggagtactcagccaggctggagaaccttctgccggacactcagtacttc
atagaggtgggagcctgtaacagcgcggggtgcggaccttccagcgacgtgatcgagacc
ttcaccagaaaagcccctcccagccaaccaccaaggatcatcagttccgtgaggtctggc
tcccgatacataatcacgtgggatcatgtcgtggcactatccaatgaatctacagtgaca
ggctacaagatactctatagacctgacggccaacatgacggtaagctgttctccacgcac
aagcactccatagaagtccccatccccagagacggagagtacgtagtcgaagttcgagca
cacagtgatggaggagatggggtagtgtcccaagtcaaaatttcaggtgtgtccacgctg
tcatcgggtctcctcagcttgctcctgccctcccttggctttcttgtcttctattcggaa
ttctga
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