Rattus norvegicus (rat): 192352
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Entry
192352 CDS
T01003
Symbol
Ss18l1
Name
(RefSeq) calcium-responsive transcription coactivator
KO
K15623
protein SSXT
Organism
rno
Rattus norvegicus (rat)
Pathway
rno03082
ATP-dependent chromatin remodeling
rno05202
Transcriptional misregulation in cancer
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
192352 (Ss18l1)
09160 Human Diseases
09161 Cancer: overview
05202 Transcriptional misregulation in cancer
192352 (Ss18l1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
rno03036
]
192352 (Ss18l1)
Chromosome and associated proteins [BR:
rno03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
192352 (Ss18l1)
GBAF(ncBAF) complex
192352 (Ss18l1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SSXT
Motif
Other DBs
NCBI-GeneID:
192352
NCBI-ProteinID:
NP_620273
RGD:
621847
Ensembl:
ENSRNOG00000060010
UniProt:
Q91XJ0
A6KMC5
A0A8I5ZQS4
LinkDB
All DBs
Position
3:187521616..187542873
Genome browser
AA seq
402 aa
AA seq
DB search
MSVAFASARPRGKGEVTQQTIQKMLDENHHLIQCILDYQSKGKTAECTQYQQILHRNLVY
LATIADSNQNMQSLLPAPPTQNMNLGPGALSQSGSSQGLHPQGSLSDTVSTGLPPASLMQ
GQIGNGPNHVSMQQTAQSTLPTTSMSMSGSGHGTGPGYSHSGPTSQSVPMQGQGAISNYV
SRTNINMQSNPVSMMHQQAATSHYNSAQGGSQHYQGQAPIAMMGQGGQGGSMMGQRPMAP
YRPSQQGSSQQYLGQEEYYSEQYSHSQGSAEPMSQQYYPDGHSDYAYQQSSYTEQSYDRS
FEDPTQHYYEGGNSQYSQQQAGYQQGTAQQQTYSQQQYPNQQSYPGQQQGYGPAQGAPSQ
YSGYQQGQGQQYGSYRTSQTGPSAQQQRPYGYEQGQYGNYQQ
NT seq
1209 nt
NT seq
+upstream
nt +downstream
nt
atgtccgtggccttcgcgtcggcgcggccgagaggcaaaggggaggtcactcagcagacc
atccagaagatgctggatgagaaccaccacctgatccagtgcatcctggactaccagagc
aagggcaagacagccgagtgcacccagtaccagcagatcctgcaccggaacctggtctac
ctggccaccatagcagattccaaccagaacatgcagtctctgcttcccgcgcctccaacc
cagaacatgaacctcgggcccggagcactgagtcagagcggttccagccagggcctgcac
ccccagggcagcctcagtgacaccgtcagcacaggcctgccccctgcctccctcatgcag
ggccagatcggtaacggtccaaaccacgtgtccatgcagcagacggctcagagcacgctg
cccacaacctccatgagtatgtcaggcagtggccatggtactgggcctgggtacagccac
tcgggacctacgtcgcagagtgtccccatgcaaggccaaggtgccatcagcaactatgtg
tctcggaccaacatcaacatgcagtccaacccagtctccatgatgcaccagcaggcggcc
acgtcccactacaactcagcgcagggtggaagccagcattaccagggccaggcgcccatt
gccatgatgggccagggtggccaaggaggcagcatgatggggcagcggcccatggcgccc
taccgaccctctcagcaaggctcttcccagcagtacctgggccaggaggagtactacagt
gaacagtacagccacagccagggttctgcagagcccatgagtcaacagtactacccagat
ggccacagtgactacgcctatcagcagtcgtcctacacagagcagagctacgaccgttca
tttgaggaccccacacagcactactatgaggggggaaactcccagtacagtcagcagcag
gctgggtaccagcagggcacagcacagcagcagacctactcccagcagcagtatcccaac
cagcagagctaccctggacagcagcagggctacggccctgcccagggagccccttcacag
tactcaggctaccagcaaggacaaggtcagcagtatggaagctacagaacgtcgcagacg
ggaccttctgcccagcagcagcggccttacggctatgagcagggccagtatggaaattac
cagcaataa
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integrated database retrieval system
