KEGG   Rattus norvegicus (rat): 25271
Entry
25271             CDS       T01003                                 
Symbol
Rxra
Name
(RefSeq) retinoic acid receptor RXR-alpha
  KO
K08524  retinoid X receptor alpha
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03320  PPAR signaling pathway
rno04151  PI3K-Akt signaling pathway
rno04659  Th17 cell differentiation
rno04919  Thyroid hormone signaling pathway
rno04920  Adipocytokine signaling pathway
rno04928  Parathyroid hormone synthesis, secretion and action
rno04932  Non-alcoholic fatty liver disease
rno04976  Bile secretion
rno05160  Hepatitis C
rno05200  Pathways in cancer
rno05202  Transcriptional misregulation in cancer
rno05207  Chemical carcinogenesis - receptor activation
rno05216  Thyroid cancer
rno05222  Small cell lung cancer
rno05223  Non-small cell lung cancer
rno05226  Gastric cancer
rno05417  Lipid and atherosclerosis
Brite
KEGG Orthology (KO) [BR:rno00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04151 PI3K-Akt signaling pathway
    25271 (Rxra)
 09150 Organismal Systems
  09151 Immune system
   04659 Th17 cell differentiation
    25271 (Rxra)
  09152 Endocrine system
   04920 Adipocytokine signaling pathway
    25271 (Rxra)
   03320 PPAR signaling pathway
    25271 (Rxra)
   04919 Thyroid hormone signaling pathway
    25271 (Rxra)
   04928 Parathyroid hormone synthesis, secretion and action
    25271 (Rxra)
  09154 Digestive system
   04976 Bile secretion
    25271 (Rxra)
 09160 Human Diseases
  09161 Cancer: overview
   05200 Pathways in cancer
    25271 (Rxra)
   05202 Transcriptional misregulation in cancer
    25271 (Rxra)
   05207 Chemical carcinogenesis - receptor activation
    25271 (Rxra)
  09162 Cancer: specific types
   05226 Gastric cancer
    25271 (Rxra)
   05216 Thyroid cancer
    25271 (Rxra)
   05222 Small cell lung cancer
    25271 (Rxra)
   05223 Non-small cell lung cancer
    25271 (Rxra)
  09172 Infectious disease: viral
   05160 Hepatitis C
    25271 (Rxra)
  09166 Cardiovascular disease
   05417 Lipid and atherosclerosis
    25271 (Rxra)
  09167 Endocrine and metabolic disease
   04932 Non-alcoholic fatty liver disease
    25271 (Rxra)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:rno03000]
    25271 (Rxra)
  09183 Protein families: signaling and cellular processes
   03310 Nuclear receptors [BR:rno03310]
    25271 (Rxra)
Transcription factors [BR:rno03000]
 Eukaryotic type
  Zinc finger
   Cys4 hepatocyte nuclear factor 4-like
    25271 (Rxra)
Nuclear receptors [BR:rno03310]
 2. Hepatocyte nuclear factor 4 like
  2B. Retinoid X receptor (RXR)
   25271 (Rxra)
SSDB
Motif
Pfam: Nuc_recep-AF1 Hormone_recep zf-C4
Other DBs
NCBI-GeneID: 25271
NCBI-ProteinID: NP_036937
RGD: 3610
Ensembl: ENSRNOG00000009446
UniProt: Q0VJ96
LinkDB
Position
3:10989832..11076366
AA seq 467 aa
MDTKHFLPLDFSTQVNSSSLSSPTGRGSMAAPSLHPSLGPGLGSPLGSPGQLHSPISTLS
SPINGMGPPFSVISSPMGPHSMSVPTTPTLGFGTGSPQLNSPMNPVSSSEDIKPPLGLNG
VLKVPAHPSGNMSSFTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNK
DCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKDRNENEVESTSSANEDMPVEKI
LEAELAVEPKTETYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLD
DQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVS
KMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRF
AKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQTT
NT seq 1404 nt   +upstreamnt  +downstreamnt
atggacaccaaacatttcctgccgctcgacttctctacccaggtgaactcttcatccctg
agctctccaacgggtcgaggctccatggctgccccctcgctgcacccttccctgggtcca
ggactcggctctcctctgggctcccctgggcagctgcactcgcctatcagcaccctgagt
tctcccatcaatggcatgggcccacccttctcggtcatcagctccccgatgggcccgcac
tccatgtcggtacccaccacacccacactgggcttcgggactggcagcccccagctcaac
tcacccatgaaccccgtgagcagcagtgaggatatcaaaccccctctaggcctcaatggc
gtcctcaaggttcctgcccacccctcaggaaatatgtcatccttcaccaagcacatctgc
gctatctgtggggaccgctcctcaggcaaacactatggggtctacagctgtgagggctgc
aagggcttcttcaagaggacagtacgcaaagacctgacctacacctgccgtgacaacaag
gactgcctgatcgacaagagacagcggaaccggtgtcagtactgccgataccagaagtgc
ctggccatgggcatgaagcgggaagccgtgcaggaggagcggcagcgaggcaaggaccgg
aacgagaatgaggtggagtccaccagcagtgccaacgaggacatgcctgtagagaagatt
ctggaagctgagctcgctgttgagcccaagactgagacatacgtggaggcaaacatgggg
ctgaaccccagctcaccaaatgaccctgttaccaacatctgtcaagcagcagacaagcag
ctcttcactcttgtggagtgggccaagaggatcccacacttttctgagctgcccctggac
gaccaggtcatcctcctccgggcaggctggaacgagctgctgattgcctccttctcccac
cgctccatagctgtgaaagacggcatcctcctggccaccggcctgcacgtacacaggaac
agcgctcacagtgctggggtgggcgccatctttgacagggtgctaacggagctggtgtcg
aagatgcgtgacatgcagatggacaagacggagctgggctgcttgcgcgccattgtcctc
ttcaaccctgactctaaggggctctcaaaccctgctgaggtggaggcgctgagggagaag
gtgtatgcatcactagaagcgtactgcaaacacaagtaccctgagcagccgggcaggttt
gccaagctgctgctccggctgcctgcactgcgatccattgggctcaagtgcctggagcac
ctgttcttcttcaagctcatcggggatacacccatcgacactttcctcatggagatgctg
gaggccccacatcaaaccacctag

KEGG   Rattus norvegicus (rat): 361801
Entry
361801            CDS       T01003                                 
Symbol
Rxrb
Name
(RefSeq) retinoic acid receptor RXR-beta
  KO
K08525  retinoid X receptor beta
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03320  PPAR signaling pathway
rno04659  Th17 cell differentiation
rno04919  Thyroid hormone signaling pathway
rno04920  Adipocytokine signaling pathway
rno04928  Parathyroid hormone synthesis, secretion and action
rno05200  Pathways in cancer
rno05202  Transcriptional misregulation in cancer
rno05207  Chemical carcinogenesis - receptor activation
rno05216  Thyroid cancer
rno05222  Small cell lung cancer
rno05223  Non-small cell lung cancer
rno05226  Gastric cancer
rno05417  Lipid and atherosclerosis
Brite
KEGG Orthology (KO) [BR:rno00001]
 09150 Organismal Systems
  09151 Immune system
   04659 Th17 cell differentiation
    361801 (Rxrb)
  09152 Endocrine system
   04920 Adipocytokine signaling pathway
    361801 (Rxrb)
   03320 PPAR signaling pathway
    361801 (Rxrb)
   04919 Thyroid hormone signaling pathway
    361801 (Rxrb)
   04928 Parathyroid hormone synthesis, secretion and action
    361801 (Rxrb)
 09160 Human Diseases
  09161 Cancer: overview
   05200 Pathways in cancer
    361801 (Rxrb)
   05202 Transcriptional misregulation in cancer
    361801 (Rxrb)
   05207 Chemical carcinogenesis - receptor activation
    361801 (Rxrb)
  09162 Cancer: specific types
   05226 Gastric cancer
    361801 (Rxrb)
   05216 Thyroid cancer
    361801 (Rxrb)
   05222 Small cell lung cancer
    361801 (Rxrb)
   05223 Non-small cell lung cancer
    361801 (Rxrb)
  09166 Cardiovascular disease
   05417 Lipid and atherosclerosis
    361801 (Rxrb)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:rno03000]
    361801 (Rxrb)
  09183 Protein families: signaling and cellular processes
   03310 Nuclear receptors [BR:rno03310]
    361801 (Rxrb)
Transcription factors [BR:rno03000]
 Eukaryotic type
  Zinc finger
   Cys4 hepatocyte nuclear factor 4-like
    361801 (Rxrb)
Nuclear receptors [BR:rno03310]
 2. Hepatocyte nuclear factor 4 like
  2B. Retinoid X receptor (RXR)
   361801 (Rxrb)
SSDB
Motif
Pfam: Hormone_recep zf-C4 Nuc_recep-AF1
Other DBs
NCBI-GeneID: 361801
NCBI-ProteinID: NP_996731
RGD: 3611
Ensembl: ENSRNOG00000000464
Vega: OTTRNOG00000001662
UniProt: A0A0G2QBZ5
LinkDB
Position
20:complement(4816813..4823267)
AA seq 518 aa
MSWATRPPFLPPRHAAGQCGPVGVRKEMHCGVASRWRRRRPWLDPAAAAAGEQQTLEPEP
GEAGRDGMGDSGRDSRSPDSSSPNPLSQGIPPSSPPGPPHTPSAPPPPMPPPPLGSPFPV
ISSSMGSPGLPPPAPPGFSGPVSSPQINSTVSLPGGGSGPPEDVKPPVLGVRGLHCPPPP
GGPGAGKRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTVDKRQRN
RCQYCRYQKCLATGMKREAVQEERQRGKDKDGDGDGAGGAPEEMPVDRILEAELAVEQKS
DQGVEGPGGTGGSGSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAG
WNELLIASFSHRSIDVRDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMRMDK
TELGCLRAIILFNPDAKGLSNPGEVEILREKVYASLETYCKQKYPEQQGRFAKLLLRLPA
LRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQLA
NT seq 1557 nt   +upstreamnt  +downstreamnt
atgtcttgggccactcgtccgcccttcctcccgccgcggcatgccgcggggcagtgtggg
ccggtgggggtgagaaaagagatgcattgtggggtcgcgtcccggtggcggcggcggcgg
ccctggctggatcccgcggcggcggcggccggagagcagcaaaccctggagccggagccg
ggggaggctggccgggacgggatgggcgacagcgggcgggattcccgaagcccagacagc
tcctccccaaatcccctttcccaggggatccctccctcttctcctcccggtccacctcac
accccttcagcacctccacctccaatgccaccccctccactgggctcccccttcccagtc
atcagttcttccatggggtctcctggcttgccccctccggctcccccaggattctccggg
cctgtcagcagccctcagattaactccacagtgtcgctccctgggggtgggtctggcccc
cctgaagatgtgaagccaccagtcttaggggtccggggcctgcactgtccaccccctcca
ggtggccctggggctggcaaacgactttgtgcaatctgcggggaccgaagctcaggcaag
cactatggggtttacagctgcgagggctgcaagggtttcttcaagcgcaccattcggaag
gacctgacctactcatgccgagataacaaagactgcacagtggacaagcgccagcggaat
cgctgtcagtactgtcgatatcagaagtgcctggccaccggcatgaaaagggaggcggta
caggaggagcgacaacgggggaaggacaaagacggggatggggatggggctgggggagcc
cccgaggagatgccggtggacaggatcctggaggcagagcttgctgtggaacagaagagc
gaccaaggcgttgagggccctgggggcaccggggggagtggcagcagccccaatgaccca
gtgactaacatctgccaggcggctgacaagcagctgttcacactcgtggagtgggccaag
aggatcccgcacttttcctccctacctctggacgaccaggtcatactgctgcgggcaggc
tggaatgagctcctcattgcgtccttctcccatcggtccatcgatgtccgagatggcatc
ctcctggccacgggtcttcatgtgcacagaaactcagcccattctgcaggcgtgggagcc
atctttgatcgggtgctgacagagctagtgtccaaaatgcgtgacatgaggatggacaag
acggagcttggctgcctgcgggcaatcatactgtttaacccagacgccaagggcctctcc
aaccctggagaggtggagatccttcgggagaaggtgtatgcctcactggagacctactgc
aagcagaagtatcctgagcagcagggccggtttgccaagctgctactacgtcttcctgcc
ctgcgctccatcggcctcaagtgtctggagcacctgttcttcttcaagctcattggcgac
acccccattgacaccttcctcatggagatgcttgaggctccccaccagctagcctga

KEGG   Rattus norvegicus (rat): 83574
Entry
83574             CDS       T01003                                 
Symbol
Rxrg
Name
(RefSeq) retinoic acid receptor RXR-gamma
  KO
K08526  retinoid X receptor gamma
Organism
rno  Rattus norvegicus (rat)
Pathway
rno03320  PPAR signaling pathway
rno04659  Th17 cell differentiation
rno04919  Thyroid hormone signaling pathway
rno04920  Adipocytokine signaling pathway
rno04928  Parathyroid hormone synthesis, secretion and action
rno05200  Pathways in cancer
rno05202  Transcriptional misregulation in cancer
rno05207  Chemical carcinogenesis - receptor activation
rno05216  Thyroid cancer
rno05222  Small cell lung cancer
rno05223  Non-small cell lung cancer
rno05226  Gastric cancer
rno05417  Lipid and atherosclerosis
Brite
KEGG Orthology (KO) [BR:rno00001]
 09150 Organismal Systems
  09151 Immune system
   04659 Th17 cell differentiation
    83574 (Rxrg)
  09152 Endocrine system
   04920 Adipocytokine signaling pathway
    83574 (Rxrg)
   03320 PPAR signaling pathway
    83574 (Rxrg)
   04919 Thyroid hormone signaling pathway
    83574 (Rxrg)
   04928 Parathyroid hormone synthesis, secretion and action
    83574 (Rxrg)
 09160 Human Diseases
  09161 Cancer: overview
   05200 Pathways in cancer
    83574 (Rxrg)
   05202 Transcriptional misregulation in cancer
    83574 (Rxrg)
   05207 Chemical carcinogenesis - receptor activation
    83574 (Rxrg)
  09162 Cancer: specific types
   05226 Gastric cancer
    83574 (Rxrg)
   05216 Thyroid cancer
    83574 (Rxrg)
   05222 Small cell lung cancer
    83574 (Rxrg)
   05223 Non-small cell lung cancer
    83574 (Rxrg)
  09166 Cardiovascular disease
   05417 Lipid and atherosclerosis
    83574 (Rxrg)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:rno03000]
    83574 (Rxrg)
  09183 Protein families: signaling and cellular processes
   03310 Nuclear receptors [BR:rno03310]
    83574 (Rxrg)
Transcription factors [BR:rno03000]
 Eukaryotic type
  Zinc finger
   Cys4 hepatocyte nuclear factor 4-like
    83574 (Rxrg)
Nuclear receptors [BR:rno03310]
 2. Hepatocyte nuclear factor 4 like
  2B. Retinoid X receptor (RXR)
   83574 (Rxrg)
SSDB
Motif
Pfam: Nuc_recep-AF1 Hormone_recep zf-C4
Other DBs
NCBI-GeneID: 83574
NCBI-ProteinID: NP_113953
RGD: 620046
Ensembl: ENSRNOG00000004537
UniProt: Q5BJR8
LinkDB
Position
13:79743430..79785173
AA seq 463 aa
MYGNYSHFMKFPTGFGGSPGHTGSTSMSPSVALPTGKPMDSHPSYTDTPVSAPRTLSAVG
TPLNALGSPYRVITSAMGPPSGALAAPPGINLVVPPSSQLNVVNSVSSSEDIKPLPGLPG
IGNMNYPSTSPGSLVKHICAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLIYTCRDNKD
CLIDKRQRNRCQYCRYQKCLVMGMKREAVQEERQRSRERAESEAECASTGHEDMPVERIL
EAELAVEPKTESYGDMSVESSTNDPVTNICHAADKQLFTLVEWAKRIPHFSDLTLEDQVI
LLRAGWNELLIASFSHRSVSVQDGILLATGLHVHRSSAHSAGVGSIFDRVLTELVSKMKD
MRMDKSELGCLRAIVLFNPDAKGLSNPSEVETLREKVYATLEAYTKQKYPEQPGRFAKLL
LRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLETPLQIT
NT seq 1392 nt   +upstreamnt  +downstreamnt
atgtatggaaattactcccacttcatgaagtttcccaccggctttggtggctcccctggt
cacactggctccacatccatgagcccatcggtagccttgcccacagggaagccgatggac
agtcatcccagctacacagataccccagtgagtgccccacggacgctgagtgctgtggga
acccccctcaatgctctcggctctccgtatagagtcatcacttctgccatgggtccaccc
tcaggagccctggcagctcctccgggaatcaacttggtggttccacccagctctcagctc
aatgtggtcaacagtgtcagcagctccgaggacatcaagcccttaccaggtctgcctggg
atcggaaatatgaactacccatccaccagccccgggtctctggtgaaacacatctgtgcc
atctgtggggacagatcctcaggaaagcactacggggtgtatagctgtgaaggctgcaaa
ggcttcttcaagagaaccataaggaaagacctcatctacacgtgtcgggataacaaagac
tgtctcatcgacaagcgccagcgcaaccgttgccagtactgtcgttaccagaagtgcctg
gtcatgggcatgaagagggaagctgtgcaagaagaaaggcagaggagccgggagcgagca
gagagtgaggcagaatgtgccagtactggccatgaagacatgccggtggagaggattcta
gaagctgagcttgctgtggaaccaaagaccgaatcctacggcgacatgagtgtggagagc
tcgacaaatgaccctgtcaccaatatatgccacgctgcggataagcagctcttcaccctt
gttgagtgggccaaacgcatcccccacttctcagacctcaccttggaggaccaggtcatt
ctgctccgggcagggtggaatgaattgctgattgcctccttctcccaccgctcggtttct
gtccaggatggcatcctgctggccacaggcctccacgtccacaggagcagcgctcacagc
gcgggcgtcggctccatctttgacagagtcctcacagagctggtgtccaagatgaaggac
atgcggatggataagtcggagctcgggtgcctgcgcgccattgtgctgttcaatccagat
gccaagggtttgtccaacccctcggaggtggagactcttcgagagaaggtttatgccacc
ctcgaggcctataccaagcagaagtatccagaacagcctggcaggtttgccaagcttctg
ctgcgcctcccagctctgcgctccattggattgaaatgcctggaacacctcttcttcttc
aagctcattggggatacccccattgacaccttcctcatggagatgttggagacccctctg
cagatcacctga

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