Rattus norvegicus (rat): 294595
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Entry
294595 CDS
T01003
Symbol
Skic3
Name
(RefSeq) tetratricopeptide repeat protein 37
KO
K12600
superkiller protein 3
Organism
rno
Rattus norvegicus (rat)
Pathway
rno03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
294595 (Skic3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rno03019
]
294595 (Skic3)
Messenger RNA biogenesis [BR:
rno03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
294595 (Skic3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_19
TPR_14
TPR_16
TPR_8
TPR_CcmH_CycH
TPR_11
TPR_17
TPR_12
TPR_7
TPR_9
ARM_TT21_2nd
ANAPC3
ARM_TT21_C
Sel1
TPR_15
Coatomer_E
BTAD
Retrotran_gag_2
TPR_20
Motif
Other DBs
NCBI-GeneID:
294595
NCBI-ProteinID:
NP_001414001
RGD:
1306062
Ensembl:
ENSRNOG00000040297
LinkDB
All DBs
Position
2:7363417..7526351
Genome browser
AA seq
1563 aa
AA seq
DB search
MSSKEVKTALKSARDAIRNKEYKEVLKHCKTVLKQEKDNYNAWVFIGVAAAELGQPDQAQ
GAYKKAAELEPEQLLAWQGLASLYEKCNHINAKDDLPGVYRKLLDLYESVDKQKWCDVCK
KLVDLYHQEKKHLEVARTWYRLIKARQEDGADRQELYELWRKLSQLLSEDAEDQNDETQQ
MLLTAFENALDLADNVPSEDHQVLYRNFIQYLSKFPHEMTRLKKACEGMITMYPAVQYPL
EVICLYLIDSGSLTDEGHQYCYKLVEMNSKSGPGLIGLGIRALQDKKYEDAISHLTEGLK
ESPLCIAGWCHLAEVQVKVHRPKEAILSCNRALKTIDNLGASGGSLHQKNLCLRLKAEAL
LKLSDCASLEEAVHILDQLSDTDNTPGLLVLQGLACLNTGAIDKATKIMEDLVASYPDLS
EAHALEAYVHFTKKDYVQAETSFQRALEKDAEVAEYHYQLGLTYWLMGEETRKDRTKALN
HFLKAARLDAHMGKVFCYLGHYYRDVAGDRNRARGCYRKAFELDDSDAESGAAAVDLSVE
LEDTETALAILTAVTQKASSGAAKWAWLRRGLYYLKAGHHSQAVADLQAALRADPKDCNC
WESLGEAYLSRGSYTTALKSFTRASELSPDSTYSVFKVAAIQQILGRYSEAIAQYQLIIK
KEEDYVPALKGLGECHLMLGKAALVDFLDGKAVDYVEQALGYFTRALQHRADVSCLWKLM
GDACTCLHPVSPAKVNVRVSGALLGQQEGQEVLRKDELLHLGGRCYGRALKLMSTSNTWC
DLGINYYRQAQHLAETGSSMNDLTELLEKSLHCLKKAVRLDSNNHLYWNALGVVTCYHGV
GNYALAQHCFIKSIQAEQINAAAWTNLGVLYLATENIEQAHEAFQMAQSLDPSYLLCWIG
QALIAERIGSYETMDLFRHTTELSMHTEGAIGYAYWVCTTLQDKSNRETELYQYNILQMN
AVPAAQGVLCKYVERIQNYAPAFTMLGYLNEHLQLKREAAEAYQRATALLHSAEDQHTYN
VTVRNWGRLLCSIGDYDKALQAFKSTPLAELEDIIGFALALFMKGLYKESSTAYERALTV
CKSEQDKAHILTAMAVTEYKQGKMDAAKSLLFKCSILKEPTAESLQVLCALGLAMQDATL
SKAALNELLKHIKQKNDYHRYLLTSAIYALQGHSVAVQRQVAKAVHSNPADPALWSLLSR
IVAQYTQQNAKGGAVAGSVAHILDSNHGKKALLYTAVNQLAMGGSTAEDKSSTALKTIQK
AAFLSPDDPAVWAGLMAACHADDKLALVSNTQPKRVDLYLALQSAVSASLKDKENLQNYN
LLLEKWSFSQAVTGLIDTGKISEAESLCTKNLKSNPDQPAVILLLRQVQCTSLLASQKPL
PDAVLEELQKTVMSNSTSVPAWQWLAQVYQSQGMMSAAEMCYRKSLQVASQQGSWSGKLS
SLLKLALLALEVCMANVSGDHWSSLVQEATSEALKVCFSPLAIFLQALLQFNRKMGARET
RRLLERVVYQTGYPNSIVSTARWYLLRHLHAKDDHELIDVLVRNAETHGDKRMLELNRKL
SAQ
NT seq
4692 nt
NT seq
+upstream
nt +downstream
nt
atgtccagcaaagaagtgaaaactgctctaaaaagtgcaagagatgcaatcagaaacaag
gagtacaaagaagttttgaaacattgcaagacagtgttaaaacaagagaaagataactat
aatgcctgggtttttattggtgttgctgcagctgaacttggacagcctgatcaggctcag
ggcgcctataagaaagccgctgaactagagccagagcagctccttgcttggcagggtcta
gcaagtttgtatgagaagtgtaatcacataaatgctaaagatgatttacctggtgtatac
cgaaagctattggatctctatgaaagtgttgacaaacagaagtggtgtgacgtgtgtaag
aaacttgtggatctctatcaccaggagaagaaacacctagaggtggctcggacatggtat
agactgataaaggcgcgtcaggaggatggggcagaccgacaagagctttatgagctgtgg
agaaagctgagtcagttgctctctgaggatgcagaagatcagaatgatgagacccagcag
atgcttttaactgcatttgagaatgcactggacttagcagataacgttcccagtgaagat
caccaagtactttataggaatttcattcagtatttgtctaaatttcctcatgagatgact
aggttgaagaaggcctgtgaaggaatgataactatgtatcctgctgtacagtacccactg
gaagtgatttgtttgtacctaattgactcagggagcctgacagatgagggacaccagtat
tgttataagctagtggaaatgaattcaaaaagtggtccaggccttattggcttaggtatt
agagctttacaagacaagaagtatgaagatgctatcagtcatctaacagaaggcttgaag
gaaagccctctctgcatagctgggtggtgtcatctagcagaagtccaagtcaaagtgcac
agacctaaggaagctattctttcttgcaatcgagctctgaagaccatagataacctcggt
gcgtcaggtggcagtcttcatcagaagaatctttgtcttcgtctgaaagcagaggctttg
cttaaactctcagactgtgcatcgttggaggaggcagtgcatatccttgatcagctttct
gacacagataataccccgggactgctggttctccaaggcctggcctgtctgaatacaggt
gctatagacaaagctacaaagatcatggaagaccttgtagcctcttaccctgatctgtct
gaagctcacgctcttgaagcttatgttcattttactaagaaggactatgtgcaagcagaa
acgagtttccagagagcactggagaaagatgctgaagttgctgaatatcattaccagctt
gggttgacatactggctcatgggtgaagaaacaagaaaagacagaacaaaggctcttaac
cactttctgaaggccgcaagactggatgcacacatgggtaaagttttctgctacctaggc
cattattaccgagatgtggctggcgatagaaatagagcccgaggctgttacaggaaagca
tttgaattagatgacagcgatgctgagtctggagctgctgcagttgacctgagcgtagag
cttgaagacacggaaactgcattagcgatcttgacagcagtaacccaaaaggcaagctca
ggagcagcgaagtgggcgtggctgagacgaggcctatactatttgaaagctggtcaccat
tctcaagcagtggctgatttacaggcagcattaagggcggaccccaaggactgcaattgt
tgggagtcattaggagaggcatacttaagcaggggtagctacacaacggccttgaagtcc
ttcacaagagccagtgagctcagccctgactccacatacagtgtgtttaaagtggcagcc
attcagcaaatcctaggcaggtattcggaagccattgcacagtatcagctgatcattaaa
aaggaggaagattatgtgcctgccttaaaaggtttgggtgagtgccacctgatgctgggg
aaggcggccttagtggattttctggacgggaaagctgtggactatgtggagcaagctctg
ggatatttcacccgggccctacagcatcgagctgatgtgtcttgtctttggaagctcatg
ggggatgcatgcacttgtctgcaccccgtttcaccagctaaagtgaatgttcgtgtctca
ggagcccttctcggccagcaagaaggacaagaagtcttacggaaagatgagctcctgcat
cttggaggaaggtgttatggtcgtgcattaaaattgatgtctacatctaatacatggtgt
gatcttggaattaattattaccgtcaagcacagcatctagcagaaacaggcagcagcatg
aatgatcttactgagttactggagaaatctttgcattgtctgaaaaaggcagtgaggctg
gacagtaataatcacttatactggaacgctcttggtgtggttacatgttaccatggagtt
ggaaattatgcccttgctcagcactgtttcatcaaatcaatccaggcagaacaaattaac
gctgctgcatggaccaacttaggagtgttataccttgcgactgaaaacattgagcaagcc
catgaagcgttccaaatggctcagtcccttgatccatcttatttattgtgctggattgga
caggctcttattgcagagagaattggaagttatgaaacaatggatctctttaggcatacc
acagagctcagtatgcatactgaaggagcaataggttatgcgtattgggtttgtacaaca
ttacaagacaaaagcaacagagaaacagagctatatcagtacaacatcctccagatgaat
gctgtccctgcagcacagggcgttctctgtaaatatgtagaaagaattcagaattacgct
ccagcgttcacaatgttgggttatttaaacgagcatctgcagttgaaaagggaagcagct
gaggcataccaaagggcaactgcactgttacattctgcagaagaccaacatacttacaat
gttacagtaagaaactggggcagattgttgtgctccattggtgactatgacaaagctctc
caggcctttaagtcaacgccccttgcagagttggaggacatcataggctttgcactggca
ttgtttatgaagggcctgtataaggagagcagcacagcctatgagagagccttgactgtt
tgtaaatcagagcaagacaaagctcacatcttgacagctatggcagtaacagaatataaa
caaggaaaaatggatgcagccaagtcattactcttcaaatgctctatattaaaggaacca
actgcagaaagcctccaagtactatgtgctctagggctggcaatgcaggatgctacactg
tcaaaagcagcacttaacgagttactgaagcatatcaaacagaaaaatgattatcacagg
taccttcttacctcagcaatttacgcactccagggccacagtgtggcagtgcaaagacaa
gtggccaaggctgtgcacagtaatcctgctgacccagccctttggtctttgctgtctcga
attgttgctcagtacacccagcagaatgcaaagggtggtgctgttgctggcagtgtggct
catattctggattcgaatcatggaaagaaggctttattgtacactgcagtgaaccagttg
gccatgggaggcagtacagcagaagacaaaagcagcactgctctaaagaccattcagaag
gcagccttcctttctccagatgatcctgctgtctgggctggcttgatggcagcctgccat
gcagatgataaactggctttggtcagtaacactcagccaaagagggtagatttatacttg
gcattgcagtctgctgtttctgcttcacttaaggacaaagaaaatttgcaaaattacaac
ctgttgcttgaaaagtggtctttttcacaagctgtcactggtctgattgacacaggaaaa
atatctgaagccgaatctctgtgcacaaagaatttaaaaagcaaccccgatcagccagct
gttatcttactgttgagacaagttcagtgtacatcactcctggcgtcacagaaacccctc
ccagatgctgtactggaagaactgcaaaaaacagtcatgtccaactcaacctctgttcca
gcatggcagtggttggcacaggtgtatcagtcccaaggaatgatgagtgccgcagagatg
tgttatagaaagagtctccaagtggcatcccagcagggcagctggagtgggaagctctcg
agcctgctgaagctagcccttcttgcactggaagtgtgcatggctaatgtttcaggtgat
cactggtcatccttggttcaagaagccacaagtgaggccttgaaggtttgctttagtccg
ctggctatcttcttgcaagcgttgttacagttcaaccgtaagatgggagcaagagagaca
cggcgactgttggagagagtggtgtatcagactggataccccaactcaattgtatcaact
gctcgttggtacctcttaagacacctccatgcgaaagatgaccatgagctaattgatgtt
ttggtgaggaatgccgagacccacggtgataaaagaatgttggaactgaatcggaagctg
tcggcccaataa
DBGET
integrated database retrieval system
