Rattus norvegicus (rat): 309126
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Entry
309126 CDS
T01003
Symbol
Tnpo1
Name
(RefSeq) transportin-1 isoform b
KO
K18752
transportin-1
Organism
rno
Rattus norvegicus (rat)
Pathway
rno03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
309126 (Tnpo1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rno03019
]
309126 (Tnpo1)
03009 Ribosome biogenesis [BR:
rno03009
]
309126 (Tnpo1)
Messenger RNA biogenesis [BR:
rno03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
309126 (Tnpo1)
Ribosome biogenesis [BR:
rno03009
]
Eukaryotic type
Pre-40S particles
Export and cytoplasmic maturation factors
309126 (Tnpo1)
Pre-60S particles
309126 (Tnpo1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HEAT_EZ
HEAT
HEAT_GCN1
TPR_IMB1
HEAT_2
Arm
Vac14_Fab1_bd
TOR1L1_N
IBN_N
HEAT_EF3_N
TPR_IPO5
Cnd1
TPR_DNAAF5
HEAT_MROH2B_C
PDS5
Adaptin_N
MMS19_C
CEP104-like_TOG
HEAT_GCN1_C
HEAT_GCN1_C_2
INTS7_N
UNC45-central
TPR_TTI1_C
Dopey_N
SCD
VPS15-like_hel
RTP1_C1
ARM_TBCD
DUF3689
Motif
Other DBs
NCBI-GeneID:
309126
NCBI-ProteinID:
NP_001094162
RGD:
1308372
Ensembl:
ENSRNOG00000014999
UniProt:
A0A8I6AG33
LinkDB
All DBs
Position
2:complement(31941731..32034366)
Genome browser
AA seq
890 aa
AA seq
DB search
MEYEWKPDEQGLQQILQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSE
DEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASK
GELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFL
QFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEAEVRKNVCRALV
MLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKL
IPVLVNGMKYSDIDIILLKGDVEEDEAIPDSEQDIRPRFHRSRTVAQQHEEDGIEEDDDD
DDEIDDDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILV
LGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKP
LMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLI
LYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSG
FLPYCEPVYQRCVNLVQKTLAQAMLNNAQPEQYEAPDKDFMIVALDLLSGLAEGLGGNIE
QLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPE
FISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGY
VCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVIQDFIFFCDAVA
SWINPKDDLRDMFCKILHGFKNQVGDENWRRFSDQFPLPLKERLAAFYGV
NT seq
2673 nt
NT seq
+upstream
nt +downstream
nt
atggagtatgagtggaaacctgacgagcaagggcttcagcagattctgcagctgctcaag
gagtcccagtccccagacaccaccatccagaggaccgtgcaacaaaaactggaacaactt
aatcaatatccagattttaacaactacttaatttttgttcttacaaaattaaaatctgaa
gatgagcccacacggtcattgagcggtctgatcttgaagaacaatgtgaaagctcatttt
cagaacttcccgaacggtgtgacggacttcatcaagagtgaatgtctaaataatattggg
gactcctctccgctgatcagggccactgttggtattttaattacgaccatagcctccaag
ggagaactgcagaattggcctgacctcttaccaaaactctgtagcctgctggattctgaa
gactacaacacctgtgagggggcattcggtgcccttcagaagatatgtgaggactccgcg
gagattttagacagcgatgtcttggatcgccctctcaacatcatgatccccaagttctta
cagtttttcaagcacagtagtcccaaaataaggtctcacgctgttgcatgtgtcaatcag
ttcatcatcagtcggacccaagcgctcatgttgcacatcgactccttcattgagaacctc
tttgcactggctggtgacgaggaagccgaggtgcggaagaacgtgtgccgagcgcttgtg
atgctgctggaagtccggatggaccgtctgctgccgcacatgcataacatagtcgagtac
atgcttcagaggacccaagaccaagatgagaatgtggctctggaggcctgtgaattctgg
ctgactttggctgaacagccaatatgcaaagatgtacttgtaaggcatctgcctaagttg
attcccgtgttagtgaatggcatgaagtactcagatatagacatcatcctgctgaagggg
gatgttgaagaagacgaggccatccctgatagtgagcaggatatacggccacggttccat
cgctcaaggacggtggctcagcagcatgaagaggatgggattgaagaggatgacgacgac
gacgatgagattgatgatgacgataccatttctgactggaatctcagaaagtgttctgct
gctgctctcgatgttctcgcaaacgtttatcgtgatgagcttttgccacacattttgcca
cttttgaaagaattgcttttccatcacgagtgggttgtgaaagagtctggcatcttggtt
ttaggagcaattgctgaaggttgcatgcaaggcatgattccgtacctgcccgagctcatt
cctcacctcattcagtgcctttctgacaaaaaggctcttgtgcgttccatcacctgctgg
actctaagccgctatgcacactgggtagtcagccagccaccagatacatacctgaagcca
ttaatgacggaattgctgaagcgtatcctggatagcaacaagagagtacaagaagctgct
tgcagtgcctttgctacgttagaagaggaggcttgtacagagcttgtcccctaccttgct
tatatactcgacaccctcgtcttcgccttcagtaaataccagcacaagaacctgctcatt
ctgtacgatgccatagggacactagcagattcagtgggacatcatttaaacaagccagaa
tatattcagatgctaatgcctcctctgatccagaagtggaacatgttaaaagatgaagac
aaggatcttttccctttacttgagtgcctctcatctgttgccacagccttgcagtctggt
ttccttccatattgtgaacctgtgtatcagcgttgtgtaaacctggtacagaagacacta
gcacaagccatgctaaacaatgctcagccagaacaatatgaagctccagataaagacttt
atgattgtggctcttgacttactcagtggcctggctgaaggactgggaggcaacattgag
cagctggtggcccgaagtaacatcctgacactgatgtatcaatgcatgcaggataaaatg
cccgaagttcggcagagttcttttgcattactaggtgatctgactaaagcttgctttcag
cacgttaagccttgtatagctgatttcatgccaatattgggaaccaatctaaatccagag
tttatttcagtctgcaacaacgccacctgggcaattggggaaatatcaattcaaatgggc
atagagatgcagccttacatccctatggtgctgcaccagctcgtggagatcattaacaga
cccaacaccccaaagacgctgttggagaacacagcaataacaattggtcgtcttggttac
gtttgtcctcaagaggtggcccccatgctacagcagtttataagaccctggtgtacctct
ctgagaaacataagagacaatgaagaaaaagattcagcattccgtgggatttgtaccatg
atcagtgtgaatcctagtggcgtaatccaagattttatatttttttgtgatgctgttgca
tcatggattaatcccaaagacgacctcagagacatgttctgtaagatccttcatggattt
aaaaaccaagttggggatgaaaattggaggcgattctctgaccagtttcctcttccctta
aaagagcgtcttgcggctttttatggtgtttaa
DBGET
integrated database retrieval system
