KEGG   Rickettsia oklahomensis: AAGW17_02250
Entry
AAGW17_02250      CDS       T11123                                 
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
rof  Rickettsia oklahomensis
Pathway
rof03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:rof00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    AAGW17_02250 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rof03021]
    AAGW17_02250 (rpoB)
   03400 DNA repair and recombination proteins [BR:rof03400]
    AAGW17_02250 (rpoB)
Enzymes [BR:rof01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     AAGW17_02250 (rpoB)
Transcription machinery [BR:rof03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     AAGW17_02250 (rpoB)
DNA repair and recombination proteins [BR:rof03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      AAGW17_02250 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_2 RNA_pol_Rpb2_1 RNA_pol_Rpb2_45 Microp_apicomplexa_15 RelB DUF7225 HisK_sensor
Other DBs
NCBI-ProteinID: XBG66683
UniProt: A0AAU7C0A8
LinkDB
Position
497071..501192
AA seq 1373 aa
MVSLRDNIEAQPLSHNRRIRKNFGHINLVADIPNLIEIQKNSYEKNFLQLNIKDSERKNK
GLQSILNSIFPISDSSNVANLEFVKYEFDTPKYDVEECSQRSLSYAAPLKVTLRLSIWDI
DEDTGTREIKGIKEQEVYMGDIPLMTKNGTFIINGTERVVVSQMHRSPGVFFYHDEGKIH
SSGKLLYSARVIPYRGSWLDLEFDAKDVIYFRIDRKRKLYATTLLRAIGMSTAEIIKFYY
NSVTYKLVKNKGWAVKFMPGHITAHRLTNDLVDADNGNVLLKAGQKITPRLAKKYSGEGL
NNILVAHETLIGKYLSEDLRDPVSGEILAKIGEIITADILNIINDLKIKNVNVLAINPQS
GPYIRNTLFADKNQDREAALCDIFRVLRPGEPANIEAAESLFYSLFFDVERYDLSEVGRI
KMNSRLELNISEGVTVLTIDDIKNIVRVLVELKDGKGIIDDIDHLGNRRVRSVGELIENQ
FRIGLVRMEKSVIERMSVGDVDTVMPHDLVNSKILVSVVKEFFSTSQLSQFMDQTNPLSE
ITHKRRLSALGPGGLSRDRAGFEVRDVHPTHYGRICPIETPEGQNIGLINSMATYARINK
HGFIESPYRRVKDRRVTDEVVYLSAIEEGKYKIGQANSKVDKDGLLQGEFINCRVEGGNF
VMVEPHEVDFIDVTPMQVVSVAASLIPFLENDDANRALMGSNMQRQAVPLIRTDAPFVGT
GVEGVVAKDSGASVVALHDGIVEQVDSNRIVIRTLEQKADGSPSVDIYNLLKFQKSNHNT
CINQKPLVQVGHYVKKNDVIADGPSTDNGEIALGRNVLVAFLPWNGYNFEDSILISERIV
KEDIFTSIHIEEFEVIARDTRLGPEEITRDIPNVSEEALRHLDEVGIIYVGAEVKAGDIL
VGKVTPKSESPITPEEKLLRAIFGEKAFDVKDSSLHVPSGVSGTVVEVRVFSRRGVEKDQ
RAIAIEKQQIEKLAKDRDDELKIIEHFVFSWLEKLLVGQVIINGPKQVKAGQTITTEMLK
GLSKGQFWQLTVEDASVMNEIEKIKTHYDEKKETLDKRFATKVEKLQSGDDLPQGALKVV
KVFIATKHKLQPGDKMAGRHGNKGVISRIVPEEDMPFLEDGTVIDIVLNPLGLPSRMNIG
QILETHLGWASINLAKKISTLVKEHQNKKIGIEQIKQFLIELYGENINSILVRSEEDIIS
FCKKVSKGVYFATPVFDGAKVQDVKDMLKLAGQDPSGQVRLIDGRTGEYFDRLVTVGQKY
LLKLHHLVDNKIHSRSIGPYSLVTQQPLGGKSHFGGQRFGEMECWALQAYGAAYTLQEML
TVKSDDVNGRIKIYDSIVRGENNFESGIPESFNVMIKEFRSLCLNVKLEVTSS
NT seq 4122 nt   +upstreamnt  +downstreamnt
atggtttcattaagggataatatagaagcacaacccttgtcacataatagaagaataaga
aaaaattttggtcacataaatttagtagcagatataccgaatttgattgaaattcaaaaa
aattcatatgaaaaaaacttcctacagttaaatattaaagattctgaaagaaaaaataag
ggtttacaatctatattaaactcaatttttcctatttcagattcttctaatgttgctaac
ttagaatttgtcaaatatgaatttgatactccaaaatatgatgtagaagagtgtagtcaa
agaagtttaagttatgctgctcctcttaaagttaccttaagattaagtatttgggacata
gatgaggataccggtactagagaaattaaagggattaaagagcaagaagtatatatgggt
gatatcccgttaatgactaaaaatggtacttttattatcaatggtacggaaagagtcgtt
gtatcacaaatgcatcgctcaccaggtgtattcttttatcatgatgaaggcaaaatccac
tcttccggaaaacttttatattctgctcgtgttattccatatagaggttcttggcttgat
ttagagtttgatgctaaggatgttatttattttagaattgatagaaaaagaaagctttat
gctactactttgcttagagctataggcatgagtactgcagaaattataaaattttattat
aattcagtcacttataagcttgttaaaaataaaggttgggcagttaaatttatgccaggg
catattactgctcatcgtttaacaaatgatttagtagatgcagataacggcaatgtttta
ctgaaagcaggacaaaaaattacccctcgtttagctaaaaaatattctggagaagggctt
aataatattttagtagctcatgaaactttaatcggcaaatatttatccgaggatttaaga
gatcctgtaagtggtgaaattttagcaaaaattggtgaaatcattactgctgatatacta
aatattattaatgatcttaaaattaaaaatgttaacgtattagcgatcaatcctcaatca
ggtccgtatataagaaataccttatttgccgataaaaaccaggatcgtgaggcagcatta
tgtgatattttcagagtgttaagaccaggtgaacctgctaatattgaagcagctgaaagc
ttgttttatagtttattttttgatgtggaaagatatgatctttcagaagttggacgaata
aaaatgaattctaggttagagctgaatatttctgaaggggttacagttttaacaattgat
gatattaaaaatatagtaagggttttagttgagcttaaagatggtaaaggtattatagac
gatattgatcatttaggtaatagaagggtgagatcggtaggtgaattgatagaaaatcaa
tttagaataggtttagtccgaatggaaaaatctgtaattgaaaggatgtcggtaggtgat
gttgatacagtaatgcctcatgatttagtaaattctaaaattttagtttcagtagtaaaa
gaattttttagtacttcacaattatcacagtttatggatcaaacaaatccattatcggaa
ataactcataaaagaaggttatcggcactcggtcctggaggtcttagtcgagatcgagca
ggttttgaggtgcgtgatgtacatccgactcattatggtcgtatttgtcctatcgaaaca
cctgaaggtcagaatattggattaattaactctatggctacctatgctagaataaataaa
cacggttttatagagagtccgtatagaagagttaaagataggcgtgtaactgatgaagtg
gtatatctttctgccattgaagaaggtaaatacaaaattgggcaagcaaattctaaagtt
gataaagacgggttactacaaggagagtttattaattgtcgtgttgagggaggaaatttt
gtaatggtagagcctcatgaggtggatttcattgatgtgactcctatgcaggtagtatca
gttgcagcttctcttatacctttcctagaaaatgatgatgctaatcgtgctttaatgggt
tcaaacatgcaaagacaagctgttcctttaattagaactgatgcaccttttgtaggtacc
ggagttgaaggagtagtagctaaagattctggagcatcggtagttgcattacatgacggt
attgttgagcaggtagattcaaatagaatcgtgattagaactctagaacaaaaagctgat
ggttctccttcagttgatatttataatttactaaaatttcaaaaatctaatcataatact
tgtattaatcaaaagcctttagttcaagttggtcattacgttaagaaaaacgatgttata
gctgacggtcctagtacggataacggtgaaattgctttaggtagaaacgtacttgtggct
ttcttaccgtggaatggttataattttgaagattcaattttaatatctgagcgtatagtc
aaagaagatatttttacatctattcatattgaagagtttgaagtaatagccagagataca
cgtcttggtcctgaagaaattactcgtgatatacctaatgtaagtgaagaagcattacgt
catcttgatgaagttggaataatttatgtaggtgcagaagtaaaagccggtgatatttta
gttggaaaagtaacaccgaagagtgagtcacctattacacctgaagaaaaattattacgt
gctatttttggggaaaaagcctttgatgtaaaagattcgtcgctgcacgtaccttccgga
gttagcggaaccgtagtagaagtaagggtattctctcgtagaggtgtagaaaaagatcag
cgtgctattgctattgaaaaacaacaaattgaaaaattagcaaaagacagagatgatgag
ttaaaaattattgaacattttgtatttagttggcttgaaaagcttttagtagggcaggtg
attattaatggtcctaagcaagtaaaagcagggcaaactattactactgaaatgctaaaa
ggtttatctaaagggcaattttggcagcttactgtggaagatgcaagtgtaatgaatgaa
atagagaagataaagactcattatgatgagaaaaaagaaactcttgataaaagatttgct
actaaggtagagaaattgcaaagtggcgatgatctacctcagggagctttgaaagtagta
aaagtatttatcgcaactaagcataaattgcaaccaggtgataagatggcaggaagacat
ggaaataaaggtgttatttcacgtatcgtacctgaagaggatatgccatttttagaagat
gggacagtgatagatattgttcttaatccgcttggtcttccgtctcgtatgaatataggg
cagattttagagacacatcttgggtgggcatcaataaatttagcgaaaaaaatatctacc
ttagtaaaggaacatcaaaataaaaagattggtattgagcaaattaagcaatttttaatt
gagctgtacggagaaaatattaattctatacttgtaagatcggaagaagatattatctct
ttctgtaagaaagtaagtaaaggtgtatattttgcaactcctgtatttgacggagcaaaa
gtgcaagatgttaaagatatgctaaagcttgccggtcaagatccttcaggacaagtaaga
ttaattgacggtagaaccggtgaatattttgatcgtctagtaactgtcggacagaaatat
ttgttgaagttgcatcatttagttgataataaaattcattctcgttctataggaccttat
agtttagtaacacagcaaccgcttgggggtaaatcgcattttggcggacagcgttttggc
gaaatggaatgctgggctctgcaagcttatggtgctgcttatacgttacaggaaatgtta
acggttaaatcagatgacgtaaacggtaggattaaaatttatgattctatagtacgtggt
gaaaataattttgaatcaggtattcctgagtcatttaatgttatgataaaagagtttaga
tctttatgtcttaacgtaaagcttgaagtgacttcaagttaa

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