Roseovarius sp. AK1035: RAK1035_2633
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Entry
RAK1035_2633 CDS
T05517
Name
(GenBank) DNA-directed RNA polymerase beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
rok
Roseovarius sp. AK1035
Pathway
rok03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rok00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
RAK1035_2633
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rok03021
]
RAK1035_2633
03400 DNA repair and recombination proteins [BR:
rok03400
]
RAK1035_2633
Enzymes [BR:
rok01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
RAK1035_2633
Transcription machinery [BR:
rok03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
RAK1035_2633
DNA repair and recombination proteins [BR:
rok03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
RAK1035_2633
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
RnfC_N
DUF6888
Motif
Other DBs
NCBI-ProteinID:
AWZ21341
LinkDB
All DBs
Position
2706359..2710495
Genome browser
AA seq
1378 aa
AA seq
DB search
MAQSFLGQKRLRRYYGKIREVLEMPNLIEVQKSSYDLFLKSGDQPQPQDGEGIKGVFQSV
FPIKDFNETSVLEFVSYELEKPKYDVDECMQRDMTYAAPLKVKLRLIVFDIDEDTGAKSV
KDIKEQDVFMGDMPLMTPNGTFVVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFTC
RIIPYRGSWLDFEFDAKDIVFARIDRRRKLPVTTLLYSLGLDQEGIMNAYYDTVDYKLKK
KKGWVTKFFPERVRGTRPTYDLIDANTGEVIFEASKKITPRAVKQLIDEGNVTELLVPFE
HIVGKFVARDIIDEETGAIYVEAGDELTLEYGKDGEISGGTLQDLLDAGITDIPVLDIDG
INVGAYIRNTMAADKNMNRESALMDIYRVMRPGEPPTEEASAALFDTLFFDAERYDLSAV
GRVKMNMRLNLDKPDTQRTLDRDDIVACVKALVELRDGKGDIDDIDHLGNRRVRSVGELM
ENQYRVGLLRMERAIKERMSSVEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNP
LSEVTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRMCPIETPEGPNIGLINSLATFAR
VNKYGFIETPYRKVIDGQVTDEVQYMSATEEMRHTVAQANANLDEGGRFVNDLVSTRQSG
EYMLAPRESVDLIDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPTLRAEAPLV
GTGIEGVVARDSGAAIMAKRAGVIDQVDAQRIVIRATADLEIGDPGVDIYRMRKFQRSNQ
NSCINQQPLVKVGDTVQKGEVIADGPCTDMGELALGKNVITAFMPWNGYNYEDSILISER
IVRDDVFTSIHIEEFEVAARDTKLGPEEITRDIPNVGEEALRNLDEAGIVYIGADVEPGD
ILVGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRVKPGDYGTVVEVRVFNRHGVEK
DERALQIEREEVERLARDRDDELAILDRNIYARLRTLIMGKVAVKGPKGVKANSDITEEL
LSTLTKGQWWQLALKDEADAKIVEALHDQYEAQKRTLDARFEDKVEKVRRGDDLPPGVMK
MVKVFIAVKRKLQPGDKMAGRHGNKGVVSKVIPIEDMPFLADGTPVDICLNPLGVPSRMN
VGQILETHMGWAARSLGLKIDEALQDYRRSGDLTPVREAMRIAYGDDVYAEGIESMDETT
LIESAGTVTSGVPIATPVFDGAKEADVNDALRRAGFDTSGQSVLFDGRTGEQFSRPVTVG
IKYLLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQ
EMLTVKSDDVAGRTKVYESIVKGEDNFEAGIPESFNVLVKEVRGLGLNMELLDAEEDE
NT seq
4137 nt
NT seq
+upstream
nt +downstream
nt
atggctcaaagcttccttggccagaaacgcttgcgcagatattacggcaaaatccgcgaa
gtgctggagatgccgaatctgatcgaggttcagaaatcctcgtatgacctgttcctgaaa
tccggcgaccagccccagccgcaggacggcgagggcatcaagggcgtcttccagtcggtc
tttccgatcaaggatttcaacgaaaccagcgtgctggaattcgtcagctatgagctggaa
aagcccaagtatgacgtcgatgagtgcatgcagcgcgacatgacctatgcggcgcccctc
aaggtcaagctgcgtctcatcgtgttcgatatcgacgaagataccggcgccaaatcggtc
aaagatatcaaggaacaagacgtgttcatgggcgatatgcccctgatgacgcccaatggc
acctttgtggtcaacggcaccgagcgcgtgatcgtatcccagatgcaccgcagccccggc
gtgttctttgaccatgacaagggcaagacccattcttcgggcaagctgctgtttacctgc
cggatcattccctatcgcgggtcgtggttggactttgagtttgacgccaaggacatcgtg
ttcgcccgtatcgaccgtcgccgcaaattgccggtgacaacgctgctgtattcgcttggt
ctcgatcaagaaggcatcatgaatgcctattacgacaccgttgattacaagctgaaaaag
aaaaagggctgggtcaccaagttcttccccgagcgcgtgcgcggcacccgcccgacctat
gacctgattgatgccaataccggcgaagtgatctttgaagcgagcaaaaagatcacgccg
cgcgcggtcaagcagctgatcgacgagggcaatgtcaccgagcttttggtgccgttcgag
catatcgttggcaagttcgtggcgcgcgacatcatcgacgaagagaccggcgcaatctat
gtcgaagcgggcgatgagctgacgcttgagtatggcaaggatggcgagatttcgggtggc
acgttgcaagacctgcttgacgccgggatcacggacattccggttctcgatatcgacggc
atcaacgtcggcgcttacatccgcaacaccatggcagcggacaagaacatgaaccgcgag
agcgcgctcatggacatctaccgcgtcatgcgccccggcgagccgcccaccgaagaggcc
tcggcggcgctctttgatacgttgttctttgatgcggaacgctatgacctgtccgccgtt
ggccgggtcaagatgaacatgcgtctgaatctcgataagccggatactcagcgcacattg
gatcgcgatgatatcgtcgcctgcgtcaaggcgttggtggaactgcgtgacggcaagggc
gatattgacgatatcgaccacctcggcaaccgccgggtccggtcggtcggcgaattgatg
gagaaccagtatcgcgttggccttctgcggatggaacgtgcgatcaaagagcgtatgtca
tcggtcgagattgacacggtgatgcctcaggatctgatcaacgccaagccggcagcggcg
gcggtacgtgaattcttcggctcttcgcagctgtcgcagttcatggaccagaccaacccg
ctgtcggaagtcacccacaagcgccgtctttcggcgctcgggccgggcggtttgacacgc
gaacgcgcgggctttgaggtgcgcgacgtgcacccgacccactatggccggatgtgcccg
attgagacgccggaagggccgaacatcggtctgatcaacagcctcgccacctttgcgcgg
gtcaataaatatggctttatcgaaacgccgtatcgcaaggtgatcgacggtcaggtgacg
gacgaagtgcagtacatgtccgccacagaagagatgcgccacactgtggcgcaggccaac
gccaatctcgacgagggcgggcggttcgttaacgatctggtctcgacccgtcagtcgggc
gaatacatgctcgccccgcgcgagagtgtggacctgatcgacgtgagccccaagcagctt
gtctcggtcgcggcttcgctcattcccttccttgagaatgacgacgccaaccgcgcattg
atgggctctaacatgcagcgtcaggcggttccgacactgcgcgccgaggcgccgctggtc
ggcaccggtatcgagggcgtcgttgcccgcgattccggcgctgccatcatggcgaaacgg
gccggggtaatcgaccaggtcgatgcacagcggatcgtgatccgtgccaccgctgatctt
gaaatcggcgatccgggcgtggacatctaccgcatgcgcaagttccagcgctcgaaccag
aacagctgcatcaaccagcagccgctggtcaaggtgggcgatactgtccagaagggcgag
gtcatcgctgatggtccttgcaccgatatgggcgaactggcgcttggcaagaacgtgatc
acggccttcatgccgtggaacggctataactacgaagactcgatcctgatttcggagcgg
atcgtgcgcgacgacgtctttacctcgatccatatcgaggaattcgaggtcgccgcccgc
gataccaaactcgggccggaagagatcacgcgcgatatcccgaacgtcggcgaggaagct
ctgcgcaacctcgacgaagcgggcatcgtctatatcggtgctgacgttgagccgggcgat
atccttgtgggcaagatcacccccaagggcgaaagcccgatgacgccggaggaaaaactc
ctccgcgccatctttggcgaaaaggccagcgacgtgcgcgacacgtccttgcgcgtcaag
ccgggtgattacggcacagtcgtcgaagtgcgggtgttcaaccgccacggtgtggaaaag
gacgagcgcgcgcttcagatcgagcgcgaagaggtcgagcgtctggcgcgcgaccgcgac
gacgagctggcgatcctggatcgcaacatctatgcccgtctgcgcactctgatcatgggc
aaggttgccgtgaaaggccccaagggcgtcaaggcgaattcggacatcaccgaagagttg
ctctcgacgctgaccaagggccagtggtggcagcttgccctgaaggacgaggccgacgcc
aaaatcgtcgaggcgctgcatgatcagtatgaggcgcaaaagcgcacgctggatgcacgg
ttcgaagacaaggtcgaaaaagtccgtcgcggcgatgatctgccgccgggtgtcatgaag
atggtcaaagtctttatcgcggtgaagcgcaagctgcagccgggtgacaagatggccggt
cgtcacggcaacaagggtgtggtctccaaggtgatcccgatcgaggacatgccgttcctt
gcggatgggacaccggttgatatctgtctcaatccgctcggcgtgccgagccggatgaac
gtgggtcagattctggaaacccacatgggctgggccgcgcgctcgctcggtctcaagatc
gacgaggcgttgcaggactatcgccgctccggcgatctgacccctgtgcgcgaggcgatg
cgtattgcttatggcgatgatgtctatgccgaagggatcgagagcatggatgagaccacg
ctgatcgagtctgcaggcactgtgaccagtggtgtgccgattgccaccccggtctttgac
ggggcgaaagaggcggatgtcaacgacgccctgcggcgtgcaggctttgacacaagcggt
cagtcggtgctgttcgacgggcgcacgggcgagcagttttcgcgccctgtgaccgtgggc
atcaagtatctgctcaagctgcatcaccttgtcgatgacaagatccacgcacgctcgacc
gggccctacagccttgtcacgcagcagcctctgggcggtaaagcccagttcggcggccag
cggttcggggaaatggaggtctgggcacttgaggcctatggcgccgcctataccctgcaa
gagatgctgacggtcaagtcggatgacgtggcaggccggaccaaggtctatgagagcatc
gtcaaaggcgaggacaatttcgaggccggtatcccggaatcgttcaacgttctcgtcaaa
gaggtccggggccttggcctcaacatggaactcctggatgcggaggaggatgagtaa
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integrated database retrieval system
