Raoultella ornithinolytica S12: TE10_23515
Help
Entry
TE10_23515 CDS
T03629
Name
(GenBank) ssDNA exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
ron
Raoultella ornithinolytica S12
Pathway
ron03410
Base excision repair
ron03430
Mismatch repair
ron03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ron00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
TE10_23515
03430 Mismatch repair
TE10_23515
03440 Homologous recombination
TE10_23515
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ron03400
]
TE10_23515
DNA repair and recombination proteins [BR:
ron03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
TE10_23515
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
TE10_23515
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
TE10_23515
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHHA1
DHH
RecJ_OB
Motif
Other DBs
NCBI-ProteinID:
AJF74825
LinkDB
All DBs
Position
complement(5134154..5135887)
Genome browser
AA seq
577 aa
AA seq
DB search
MKQQTQLRRREAVDGAELPADLSPLLQRLYASRGVRSAQELERGVKGMLPWAQLNGIDKA
VEMLYDAFQQDLHIVIVGDFDADGATSTALSVLALRALGYGNVSYLVPNRFEDGYGLSPE
VVDQAHARGAQMIMTVDNGISSHSGVDRAHDLGIPVVVTDHHLPGDTLPAAEAIVNPNLR
DCGFPSKSLAGVGVAFYLMLALRTFLRDKNWFETRGIAAPNLAELLDLVALGTVADVVPL
DANNRILTWQGLSRIRAGKCRPGIKALLEIANRDPQKLAASDLGFALGPRLNAAGRLDDM
SVGVALLLCDNAGEARVLANELDALNQTRKEIEQGMQAEALTLCQQLERSSEALPGGLAM
YHPQWHQGVVGILASRIKERFHRPVIAFAPTGDGLLKGSGRSIQGLHMRDALERLDTLNP
GLILKFGGHAMAAGLSLEEARFEEFQQRFGELVTEWLDPALLQGEVVSDGPLDAGEMSME
VAQMLRDAGPWGQMFPEPLFDGRFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTS
IWPDNGVREVTLAYKLDINEFRGNRSLQLIIDHLWPV
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
gtgaaacaacagacacaactgcgccgccgtgaggcggtcgatggcgcggagcttcccgcc
gacctttcgccgctgctgcagcggctctacgcgagccgcggcgtacgcagcgcgcaggaa
ctggagcgcggcgtcaagggcatgctgccgtgggcgcagctcaacggcatcgacaaagcc
gtagagatgctctacgacgccttccagcaggatttgcatattgtaatcgtcggtgatttt
gacgccgatggcgccaccagcaccgccctgagcgtgctggcgctgcgcgcgctgggctac
ggcaacgtctcctatctggtaccgaaccgctttgaagatggctacggcctgagcccggaa
gtggtcgatcaggcccacgcccgcggcgcgcagatgatcatgaccgtcgataacggcatc
tcctcgcatagcggcgtcgatcgcgcgcacgatctggggatcccggtagtcgtcaccgat
caccacctgccgggcgatacgctgccggcggcggaggctatcgtcaacccgaacctgcgc
gactgcggcttcccgtcaaaatcgctggccggcgtcggggtggcgttttacctgatgctg
gcgctgcgcaccttcctgcgcgataaaaactggtttgaaacgcgcgggattgccgcgcct
aacctcgctgagctgctggacctggtggcgctgggaacggtggccgacgtggtgccgctg
gatgccaataaccgcatcctcacctggcaggggctgagccgcattcgggcgggcaagtgc
cgcccgggaattaaagcgctgctggagattgccaaccgcgacccgcagaagctggcggcc
agcgatctcggctttgcccttggcccgcggctgaacgcggcgggaaggctggacgatatg
tcggtcggcgtggcgctgctgctgtgcgataacgccggcgaagcgcgggtgctggccaac
gagctggatgccctgaaccagacgcgcaaagagatagagcaggggatgcaggcggaagcg
ctcaccctgtgccagcagcttgaacgcagcagcgaagcgctgccgggcgggctggcaatg
tatcacccgcagtggcatcagggcgtggtcggcattctggcctcgcgaattaaagagcgc
tttcaccgtccggttatcgccttcgcgccgacgggtgacgggctgttaaaaggctccggc
cgctctattcaggggctgcacatgcgcgatgcgctggagcgtctcgacacgctcaacccg
gggctgatcctcaagtttggcggccacgcgatggcggcaggactgtcgctggaagaggcc
cgcttcgaggagttccagcagcgcttcggcgagctggtgaccgagtggctggatcccgcg
ctgctgcagggggaagtggtttccgacggtccgctggacgccggggagatgagcatggaa
gtggcgcagatgctgcgcgacgccgggccgtgggggcagatgttcccagagccgctgttc
gacggccgcttccgcctgctgcagcagcgtctggtgggcgagcggcacctcaaggtgatg
gtcgagccggttggcggcgggccgctgctggacgggatcgcctttaacgtcgatacctcg
atttggccggataacggcgtgcgcgaagtgaccctcgcctataagctcgatatcaacgag
tttcgcggcaaccgcagcctgcagcttatcattgaccatctttggccggtgtga
DBGET
integrated database retrieval system
