Raoultella ornithinolytica B6: RORB6_21120
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Entry
RORB6_21120 CDS
T02625
Name
(GenBank) regulatory protein CsrD
KO
K18765
RNase E specificity factor CsrD
Organism
ror
Raoultella ornithinolytica B6
Brite
KEGG Orthology (KO) [BR:
ror00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ror03019
]
RORB6_21120
Messenger RNA biogenesis [BR:
ror03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
RORB6_21120
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
GAPES4
GDPD
Motif
Other DBs
NCBI-ProteinID:
AGJ88904
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Position
4646400..4648340
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AA seq
646 aa
AA seq
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MRLTTKFSAFVTLLTSLTIFVTLIGASLSFYNGIQLKMENRVQAVATMLDNRLISSSFDK
LEPQMDELMTPVEIVQVDFLLNGKPVYGHSRSDSYRPPGSKNQYREITVPSLKHPGMTIH
VVYLDPMVNYFRSLHITGPLSIAIGLMVLVIFFSVRWIRRQLAGQELLEVRAARILSGER
GPQVRGSVHEWPASTSSALDMLLSELQFASDQRSRMDTLIRSYAAQDSKTGLNNRLFFDN
QLATLLEDQEKVGSHGIVMMIRLPEFDLLRDNWGRAAAEEHYFTLINLLSTFIMRYPGAL
LARYHRSDFAVLLPHRTLKEADSIAGLLLKAVDALPPTRILDRDDMMHIGLCAFRSGQTT
AQVMERAEAATRNAVLQGSNSWAVYDDSLPEKGRGNVRWRTLIEQMLSRGGPRLYQKPAV
TRDGRVHHRELMSRLYDGKEEVIAAEYMPMVQQFGLAEEYDRLQITRLLPFLSFWPEENL
ALQVTVESLIRPRFQRWLRDTLMQSEKSQRRRIIFELAEADVCQYIGRLQPVMRLVNALG
IRVAVVQAGLTLVGTSWIKQLDVEVIKLHQGLSRNIEKRSENQLLVQSLVEACKGMPVQV
FATGVRSRSEWQVLSQCGVTGGQGEFFAASQPLDTNVKKYSQRYSV
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atgcgattaacgacgaagttctcagcatttgtcacgctgcttaccagcctgaccatcttt
gtcacgctcatcggtgcttcgctgagtttttataacggtatccagctgaagatggagaat
cgcgtccaggccgtggcgacgatgctggataaccgcctgatctcatcctcgttcgataag
ctcgaaccgcaaatggatgagctgatgacgccggtggagattgtgcaggtcgattttctg
cttaacggcaagccggtgtacggtcactcgcgtagcgacagctatcgtccgccggggagt
aagaatcagtatcgtgaaataacggtaccgtcgttaaaacatcccggtatgacgattcac
gtggtctacctcgacccgatggtgaattatttccgctcgttgcacatcaccgggccctta
tcgatagctatcggtctgatggttctggttatctttttctccgtacgctggattcgccgt
cagcttgcaggccaggagctgctggaggtgcgcgctgcgcgaatcctcagtggcgaacgc
gggccgcaggttagagggtcggtacatgagtggccggccagcaccagcagcgcgctggat
atgctgctttccgaactgcagtttgccagcgatcagcgtagtcgtatggatacgctgatt
cgttcttatgctgcacaagactcgaaaaccgggctgaataatcgtctgttctttgataat
cagctggcaactctgctggaagatcaggaaaaagtgggttcgcacggtatcgtgatgatg
attcgcctgccggagttcgatctgctacgtgataactggggacgagccgctgccgaagaa
cactacttcacgctcatcaacctgctgtcgacttttattatgcgctatcccggggcgctg
ctggcgcgctaccaccgcagtgattttgccgtactccttcctcaccgtaccttaaaagag
gccgatagcatcgccgggttgctgttaaaagcggtggatgcgctgccgccgacgcggatt
cttgaccgcgatgacatgatgcacatcggtctttgcgctttccgcagcgggcagacaacg
gcccaggtgatggaacgcgccgaggccgcgacgcgcaatgcggtgctacagggcagcaat
agctgggccgtctacgatgactcgttaccggagaaagggcgcggtaacgtccgctggcgt
acgctgattgaacaaatgctcagccgcggcgggccgcgactgtaccagaagccggccgtt
acccgcgatggacgcgtccatcatcgtgaactgatgtcgcggttgtatgacggaaaggaa
gaggtgatcgcggcagaatatatgccaatggtgcaacaatttggtctggcggaagagtac
gaccgcctgcagatcacgcggttactgccatttttaagtttttggccggaggaaaacctc
gcgctgcaggtgacggtagagtcattgatccggccgagatttcagcgctggctgcgtgat
accttgatgcagagtgaaaaatcgcaacgtcgacggattatttttgaacttgcagaggca
gatgtttgtcaatatatcggccgtttacaaccggtaatgcgcctggtcaatgctctgggt
attcgtgtcgccgtcgtgcaggccggattaacgctggttggaaccagttggatcaagcag
ttggatgtcgaagtgattaagctgcaccaggggctgtcgcgcaatatcgaaaagcgcagt
gagaaccagctgctggttcagagcctggtggaggcctgtaagggcatgccggtccaggtt
tttgcaaccggcgttcgcagtcgcagtgagtggcaggtgctgtctcagtgcggtgtcacg
ggtggtcagggggaattttttgccgcctcacagccacttgacacaaatgtgaaaaaatat
tcgcaaagatactcggtttga
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