Roseivivax sp. THAF197b: FIV09_02305
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Entry
FIV09_02305 CDS
T06253
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
rot
Roseivivax sp. THAF197b
Pathway
rot03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rot00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FIV09_02305 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rot03021
]
FIV09_02305 (rpoC)
03400 DNA repair and recombination proteins [BR:
rot03400
]
FIV09_02305 (rpoC)
Enzymes [BR:
rot01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FIV09_02305 (rpoC)
Transcription machinery [BR:
rot03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FIV09_02305 (rpoC)
DNA repair and recombination proteins [BR:
rot03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FIV09_02305 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
RPOC_hybrid
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
QFS81649
UniProt:
A0A5P8YXL0
LinkDB
All DBs
Position
446444..450691
Genome browser
AA seq
1415 aa
AA seq
DB search
MNQEITNNPFNPLTPPKVFDEIKVSLASPERILSWSFGEIKKPETINYRTFKPERDGLFC
ARIFGPIKDYECLCGKYKRMKYRGVVCEKCGVEVTLQKVRRERMGHIELAAPCAHIWFLK
SLPSRIGLMLDMTLRDLERVLYFENYVVIEPGLTDLTYGQMLNEDEFLDAQDQYGMDAFT
ANIGAEAIREMLAQIDLESEADRLREELKEATGELKPKKIIKRLKVVENFLESGNRPEWM
IMTVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIVRNEKR
MLQESVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDFSGRSVIVT
GPELKLHQCGLPKKMALELFKPFIYSRLEAKGLSSTVKQAKKLVEKERPEVWDILDEVIR
EHPVLLNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQ
LEARVLMMSTNNVLSPANGAPIIVPSQDMILGLYYTTIMREGMKGEGMIFSSTEEVEHAL
NAGEVHLHAKIQCRVKQIDAEGQEVYTRFETTPGRARLGALLPMNNKAPFDLVNTLLRKK
DVQKVIDTVYRYCGQKESVIFCDQIMTMGFKEAFKAGISFGKDDMVIPDSKWPIVEETRD
QVKDFEQQYMDGLITQGEKYNKVVDAWSKCNDKVTEAMMSTISSAQHDTDGSEMEPNSVY
MMAHSGARGSVTQMKQLGGMRGLMAKPNGDIIETPIISNFKEGLTVLEYFNSTHGARKGL
SDTALKTANSGYLTRRLVDVAQDCIVRMKDCGTENSITCEAAINDGEMVASIGERLLGRV
AAEDVVKPGTDEVLCKHGQLIDERTADAIEEAAVQTVRIRSPLTCEAEEGVCAMCYGRDL
ARGTMVNVGEAVGIIAAQSIGEPGTQLTMRTFHIGGVAQGGQQSFLEASQSGKIEYDNPN
TLVNAAGDLLVMGRNMKIRIVDENGAERASHKVGYGTKLFVKEGDTIERGDKLFEWDPYT
LPIIAEKDGTARLVDLVNGVAVREETDDATGMSQKIVMDWRAAPKGNELKPEIILQDEGG
EPVRNDQGNPITYPMSVDAILSVEDGDAVKAGDVVARIPREGAKTKDITGGLPRVAELFE
ARRPKDHAIIAEIDGYVRFGKDYKNKRRISIEPADENVDPKEYMIPKGKHIPVAEGDYVQ
KGDYIMDGNPAPHDILSIMGVEALANYMIDEVQDVYRLQGVKINDKHVEVIVRQMLQKWE
ILHSGDTTLLKGEHVDKVEFDEANAKAEKKGGRPAQGEPILLGITKASLQTRSFISAASF
QETTRVLTEASVQGKVDTLVGLKENVIVGRLIPAGTGGATTNVQKIATDRDNVVIEARRA
EAEEAARLAAPEQSADTVGGDAFDTVIEDTTESRE
NT seq
4248 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaggaaatcacgaacaacccgttcaatcccctgaccccgcccaaggtcttcgac
gagatcaaggtgtcgctggccagccccgagcggatcctctcttggtccttcggcgagatc
aagaagcccgagacgatcaactaccgcacgttcaagcccgagcgtgacggcctgttctgc
gcgcgcatcttcggtccgatcaaggattacgaatgcctctgcggcaagtacaagcgcatg
aaatatcgcggcgtcgtctgcgaaaagtgcggcgtcgaggttaccctgcagaaggtccgc
cgcgagcgcatgggccatatcgaactggccgcaccctgcgcccatatctggttcctgaag
tcgctgccctcgcgcatcggcctcatgctggacatgacgctgcgagacctcgagcgcgtg
ctctatttcgaaaactacgtcgtgatcgagccgggcctgacggacctgacctatggccag
atgctgaacgaggatgaattcctcgacgcgcaggaccaatacggcatggacgccttcacc
gccaatatcggcgccgaggcgatccgcgaaatgctggcccagatcgacctggaatccgaa
gccgaccgcctgcgcgaggagctgaaggaagccacgggcgagctgaagcccaagaagatc
atcaagcgcttgaaagtggtcgagaacttccttgaatcgggcaaccgtcccgagtggatg
atcatgaccgtgatcccggtcattccgccggaactgcgcccgctggtgccgctggacggt
ggccgctttgcgacctcggacctcaacgatctttatcgtcgtgtgatcaaccggaacaac
cgtctcaagcgccttatcgagctgcgcgcgcccgacatcatcgtccgcaacgaaaagcgg
atgctgcaggaatctgtcgacgccctgttcgacaacggccgtcgcggtcgcgtcatcacc
ggtgccaacaagcgcccgctgaagtcgctctcggacatgctcaagggcaagcagggtcgc
ttccgtcagaaccttctgggtaagcgcgtcgacttctcgggccgttcggtcatcgtgacc
ggtccggagctgaagctgcatcaatgcggcctgcccaagaagatggcgctcgagctcttc
aagccgttcatctactcgcggcttgaggccaagggcctcagctcgaccgtgaaacaagcg
aagaaactggttgagaaagagcgtcccgaggtttgggacatcctcgacgaggtgatccgc
gaacaccccgtgctgctgaaccgtgcgcccacgctgcaccgtctcggcatccaggcgttc
gagccgatcctgatcgaaggcaaggcgatccagctgcacccgctcgtttgttcggccttc
aacgccgacttcgacggtgaccagatggccgtgcacgtgccgctctcgctcgaggcgcag
ctcgaagcgcgtgtcctgatgatgtccacgaacaacgttctgtcgcctgccaacggcgca
ccgatcatcgtgccgtcgcaggacatgatcctgggtctctactacaccacgatcatgcgt
gaaggcatgaagggcgaaggcatgatcttctcctcgaccgaggaggtggagcacgcgctg
aacgccggtgaagtgcatctgcacgccaagatccagtgccgtgtgaagcagatcgatgcc
gaaggtcaggaagtctacacgcgcttcgagacgacgcccggccgggcccgcctcggtgcg
ctcctgccgatgaacaacaaggcgcccttcgatctggtgaacacgctccttcgaaagaaa
gacgtgcagaaggtcatcgacaccgtctaccgctattgcggtcagaaggagtcggtcatc
ttctgtgaccagatcatgaccatgggcttcaaggaagcgttcaaggcgggcatctcgttc
ggcaaggatgacatggtcattccggactcgaagtggcccatcgtcgaagagacgcgcgat
caggtgaaggacttcgaacagcaatacatggacggcctgatcacccagggtgagaagtac
aacaaggtcgtcgatgcctggtcgaagtgtaacgacaaggtcaccgaggcgatgatgtcc
accatctcgtcggcgcagcatgacaccgacgggtccgagatggagccgaactcggtctac
atgatggcgcattccggtgcccgtggctcggtcacgcagatgaagcagttgggcggcatg
cgcggcctgatggccaagccgaacggcgacatcatcgagacgccgatcatctcgaacttc
aaggaaggtctgaccgttcttgaatacttcaactcgacgcacggcgcccggaagggtctg
tcggacaccgcgctcaagaccgcgaactccggttacctgacccgtcgtctcgtggacgtg
gcgcaggattgcatcgtgcggatgaaggattgcggcaccgagaactcgatcacctgcgaa
gcggccatcaacgacggcgaaatggtcgcttccatcggcgagcgtctcctgggccgcgtc
gcggcggaggacgtggtgaagccgggcacggacgaagtgctctgcaagcatggccagctc
atcgacgagcgcacggccgatgcgatcgaggaggcggcggttcagaccgtgcgcattcgc
tcgccgctgacctgcgaagccgaagagggcgtctgcgccatgtgttacgggcgtgacctc
gcgcgcggcaccatggtcaacgtgggcgaagcggtcggcatcatcgcggcacaatccatc
ggtgagccgggcacgcagctgacgatgcggacgttccacatcggcggcgttgcccagggt
ggtcagcaatccttcctcgaggcgtcgcaatcgggcaagatcgagtatgacaacccgaac
acgctggtgaacgcggcaggcgatcttctggtcatggggcggaacatgaagatccgcatc
gtggacgagaacggcgccgagcgtgcaagccacaaggtcggttacggcaccaagctcttc
gtcaaggaaggcgacacgatcgagcgcggcgacaagctgttcgaatgggatccctatacc
ctgccgatcatcgccgagaaggacggcaccgcccgtctggtggacctcgtgaacggcgtc
gccgtccgcgaagagaccgacgatgcgaccggcatgtcccagaagatcgtcatggactgg
cgtgctgcccccaagggcaacgagctcaagcccgagatcatcctgcaggatgagggcggc
gagcccgtgcgcaacgatcagggcaacccgatcacctacccgatgtcggtggatgcgatc
ctctccgttgaggatggcgacgcggtcaaggccggtgacgtggtggcgcggatcccgcgc
gaaggtgcgaagacgaaggacatcaccggtggtctgccgcgtgtggccgaactctttgag
gcccgtcgtcccaaggatcacgcgatcatcgccgaaatcgacggctatgtgcgcttcggc
aaggactacaagaacaagcgccggatctcgatcgagcccgcggatgagaatgtggacccc
aaggaatacatgatccccaagggcaagcacatcccggtggccgaaggcgattacgtccag
aagggcgactacatcatggacggcaaccctgcgccgcatgacatcctgtccatcatgggt
gtcgaggcgctggccaactacatgatcgacgaagtccaggacgtctatcgactgcagggc
gtgaagatcaacgacaagcacgttgaggtgatcgtccgccagatgctccagaagtgggaa
atcctgcacagcggggacaccacgcttctcaagggcgagcatgtggacaaggtcgagttc
gacgaggccaacgctaaggccgagaagaagggcggacgtcccgcacagggcgagccgatc
cttctgggcatcaccaaggcgtcgctgcagacgcgttcgttcatctccgcggcctccttc
caggagacgacccgcgtgctcaccgaagcctcggtgcagggcaaggtcgatacgctcgtg
ggtctgaaggagaacgtcatcgtgggccgcctcatcccggcgggcaccggtggagccacg
acgaacgtgcagaagatcgcaacggatcgcgacaatgtcgtgatcgaggcgcgccgtgcc
gaggccgaagaggctgcacgcctagctgcgccggaacaaagcgccgatacggtcggtggc
gatgccttcgacacggtgatcgaggacacgaccgagagccgcgaataa
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integrated database retrieval system
