Ruminiclostridium papyrosolvens: P0092_01835
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Entry
P0092_01835 CDS
T08965
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
rpay
Ruminiclostridium papyrosolvens
Pathway
rpay03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rpay00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
P0092_01835 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rpay03021
]
P0092_01835 (rpoB)
03400 DNA repair and recombination proteins [BR:
rpay03400
]
P0092_01835 (rpoB)
Enzymes [BR:
rpay01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
P0092_01835 (rpoB)
Transcription machinery [BR:
rpay03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
P0092_01835 (rpoB)
DNA repair and recombination proteins [BR:
rpay03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
P0092_01835 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
WES34744
LinkDB
All DBs
Position
407994..411734
Genome browser
AA seq
1246 aa
AA seq
DB search
MVQPVKLGRNTRMSYSKMREVLEMPNLIEVQKNSYQWFLDEGLREVFRDISPITDYTGNL
ILDFVDYSLDDTPKYSVEECKERDTTYSAPLKAKVRLINKESGEVKEQEIFMGDFPLMTD
TGTFIINGAERVIVSQLVRSPGIYYSMKFDRVGKKLYSNTVIPNRGAWLEYETDSNDILS
VRIDRTRKLPLTVLLRALGYGTDFEIMQLLGEDERLLATIQKDNAKTTEEGLLEIYKRLR
PGEPPTVDSARSLLNSLFFDPKRYDLAKFGRFKFNKKLAISNLISGQVAAENIVSAETGE
VLVTEGELIERDKAVEVQNSGVNIVYLSVEGKSIKVIGNNTVDIHAYVDFDISDLNINEK
VKYAVLKEILENTSGEEQIKKTLKERINDLIPKHITIDDIIASINYIINLDYGIGSIDDI
DHLGNRRIRSVGELLQNQFRIGLSRMERVVRERMTIQDIDIVTPQALINIRPVAAAIKEF
FGSSQLSQFMDQTNPLAELTNKRRLSALGPGGLSRERAGFEVRDVHHSHYGRMCPIETPE
GPNIGLIGSLSTYARVNEYGFIEAPYRKVDRKNRRVTNEIVYLTADVEDPFVVAQATEPL
SDDGTFVSNKVVARYRHEILEVESNKIDFMDVSPQQMVSVATAMIPFLENDDANRALMGS
NMQRQAVPLIKADSPIVGTGIEFKAARDSGVCVIAKNAGVIDKVSANEIVIKTNSGQKDT
YKLLKYMRSNQGTCLNQRPIVRKGEMIEKGEIIADGPSTDNGEIALGRNILIGFMTWEGY
NYEDAILINEKLVKEDVYTSIHIEEYEAESRDTKLGPEEITRDIPNVGEEALKDLDDRGI
IRIGAEVRSGDILVGKVTPKGETELTAEERLLRAIFGEKAREVRDTSLRVPHGESGIIVD
VKVFTRENGDELPPGVNQLVRCYIAQKRKISVGDKMAGRHGNKGVISRILPEEDMPFLPD
GTPLEIVLNPLGVPSRMNIGQVLEVHLGFAAKALGWKIATPVFDGATEEDIRDTLIQAGK
DPDGKTVLYDGRTGDPFDNRVTVGYMYYLKLAHLVDDKIHARSTGPYSLVTQQPLGGKAQ
FGGQRFGEMEVWALEAYGAAYTLQEILTVKSDDVVGRVKTYESIVKGENIPEPGIPESFK
VLIKELQSLALDVKVYSEEQEEIAIKEYVEDDLEELNVNIEGREDEVVLTNDLDTELRDD
VLEEELDIDDLDIGTISTGDNLEEELTEELFADDELSDDFEDDEDF
NT seq
3741 nt
NT seq
+upstream
nt +downstream
nt
atggtacaacccgtaaaattgggtagaaacaccaggatgagttattccaaaatgcgagaa
gtactggaaatgccaaatctgattgaggttcaaaagaactcatatcaatggtttttggat
gaaggtcttcgtgaagttttcagagatatttccccgattacagattatactggaaactta
atattggattttgtggattattcccttgatgatacgccaaagtatagtgtcgaagaatgt
aaggaaagagacactacatactcagcccctctcaaggcgaaggtaaggttaattaacaag
gagtccggagaagttaaagagcaggaaatctttatgggtgattttcctcttatgacagat
acaggaacctttataattaatggtgcagagcgtgtaattgtcagccagttggtaaggtca
cccggtatctactattcaatgaagtttgaccgtgttggtaaaaagctgtattcgaacaca
gttattcctaacaggggagcatggcttgaatacgaaacagactcaaacgatatactttca
gtcagaatagacaggacaaggaagttgcctttaactgtgctgcttagagcattggggtac
ggtactgactttgagattatgcaattgttgggtgaagatgaaagacttcttgcaacaata
caaaaggataatgcaaaaactacagaagaaggcttacttgaaatatacaagagattaaga
cctggggaaccgcctacagttgatagtgcaaggtctctgcttaacagtttgttttttgat
ccaaagagatatgatcttgccaagtttggtaggtttaagtttaataaaaagttagcaata
tcaaatctgatcagtgggcaagttgctgcagagaatatcgtatcagctgagactggtgag
gtattagtaaccgaaggtgaattaattgaaagagataaggctgtagaagttcagaactcc
ggtgtaaatatagtttacctttcagttgaaggtaaatctataaaagttatcggaaacaat
actgtagatatacatgcctatgttgactttgatatatcagatttaaatataaacgaaaaa
gtaaagtatgctgtattgaaagaaattcttgaaaatacaagcggcgaagagcagataaag
aaaactcttaaagagagaattaacgacctgattcctaagcatatcacaattgatgatatt
attgcatcgataaattatattattaatcttgattatggaatcggttctattgatgatatt
gaccacttgggtaacagaagaatccgttccgtcggagaattgctccagaatcagttcaga
ataggtctctcaagaatggaaagagttgtaagagagagaatgactatacaagatattgat
atagttacccctcaggcattgataaacataagaccggttgcagctgctataaaagaattc
tttggaagcagtcagctgtcacagtttatggatcagacaaatcctcttgctgagttaact
aacaagagaagattaagtgccttaggacccggtggattgagcagagagagagccggcttt
gaagtccgtgacgttcaccactctcactatggtcgtatgtgtcctattgagacacctgaa
ggtccgaacatcggtttgataggttcattaagtacctatgcaagagtaaacgagtacgga
tttatagaagcaccgtacagaaaagtagataggaaaaacagaagagttacaaatgagata
gtataccttacagctgacgtagaagacccatttgttgttgctcaggcaacggaaccactt
tcagatgacggaacttttgtttcaaataaggtagtagctcgttacagacatgaaattttg
gaagttgagagcaataaaattgacttcatggatgtttcgccacaacagatggtatctgtt
gctacagcaatgattccgttccttgaaaacgatgatgctaaccgtgcgctgatgggttct
aacatgcaacgtcaggcggttccattgattaaggctgattctcctatcgtaggtacaggt
attgagttcaaggcagcaagagattcaggagtttgtgttattgccaaaaatgcaggtgtt
attgacaaggtatctgccaacgaaatagttattaagactaacagtgggcaaaaagatact
tataaactgctgaaatatatgcgctcaaaccaaggaacctgtttgaatcagaggcctatc
gtaagaaaaggcgagatgatagaaaaaggtgaaattattgctgacggaccgtcaacagat
aatggagaaatagctctgggtagaaacattctcataggatttatgacttgggaaggttat
aactacgaggatgctattcttataaatgaaaaactggttaaagaggatgtatatacatcc
atacacatagaggaatatgaagctgaatcaagagatactaaactgggacctgaagaaatc
acaagagatattccaaatgttggagaggaagcactaaaagaccttgatgacagaggaatt
atcagaataggtgctgaggttcgttcaggagatatcctagttggtaaggttactccaaaa
ggagaaactgagcttacagcagaagaacgtttgctaagagcaatatttggtgaaaaggcg
agagaagttcgtgatacatccctgagagtacctcatggagaatccggtattattgttgac
gttaaggtgttcacccgtgagaatggtgatgaactgccaccaggagtaaatcagcttgta
agatgttacatcgcccagaagagaaagatttctgttggtgataagatggcgggaagacat
ggtaacaagggtgttatttcaagaatactacccgaagaagatatgccgttcttgccggat
ggtacaccgctggagatagttttgaatcctctcggcgttccatcacgtatgaatatcggt
caggtgcttgaagtccatctgggatttgcagcaaaagcattgggctggaaaattgcaact
cctgtatttgacggagcaacagaggaagacatcagggatactcttattcaagcaggaaaa
gaccctgatggaaagacagttctttatgatggaagaacaggtgacccatttgacaacaga
gtaacagttggatatatgtactaccttaaattggctcacttggttgatgataagatacat
gctcgttctaccggaccatactcacttgtaactcagcagccacttggtggtaaggctcag
ttcggtggtcagagattcggggaaatggaagtttgggctctcgaagcatacggagctgct
tatacattgcaggaaatacttacagttaagtccgatgacgttgtaggtagagttaagaca
tacgaatccatagttaagggagaaaacattcctgaacctggaattcctgagtccttcaag
gttcttataaaagaacttcagagtttggcacttgatgttaaggtatattctgaagaacag
gaagaaattgcaataaaagagtatgttgaagatgatcttgaagaattgaatgttaacatc
gaaggcagagaagacgaagtagttctgacaaatgatctggataccgaattaagagacgat
gttcttgaagaagagcttgatattgatgatcttgatattggaacaattagtacaggtgat
aatcttgaagaagaattgactgaagaattatttgctgatgatgaactaagcgatgacttt
gaagacgacgaggatttttaa
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