Rhodopseudomonas palustris BisB18: RPC_3279
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Entry
RPC_3279 CDS
T00336
Name
(GenBank) ATP-dependent DNA helicase, Rep family
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
rpc
Rhodopseudomonas palustris BisB18
Pathway
rpc03420
Nucleotide excision repair
rpc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rpc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RPC_3279
03430 Mismatch repair
RPC_3279
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rpc03400
]
RPC_3279
Enzymes [BR:
rpc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RPC_3279
DNA repair and recombination proteins [BR:
rpc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RPC_3279
MMR (mismatch excision repair)
Other MMR factors
RPC_3279
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
PcrA_UvrD_tudor
AAA_11
DUF3553
Motif
Other DBs
NCBI-ProteinID:
ABD88821
UniProt:
Q211W5
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All DBs
Position
3629457..3632057
Genome browser
AA seq
866 aa
AA seq
DB search
MTDPTNKRLANDLPGYQPAAGGIAARARAQAMPAYLAGLNPEQSDAVQTLDGPVLVLAGA
GTGKTRVLTSRIAHILSSGRARPGEILSVTFTNKAAREMKLRLGQMLGQAVEGMPWLGTF
HSIGGRILRYHAELVQLTSNFTVLDTDDQIRLLKQLLAADNIDDKRWPARMLAGLIDGWK
NRGLTPSQVPAGEAAVFGNGRGGKLYAAYQERLKVLNAADFGDLLLEDIRLFREHPDVLR
QYQQRFKYILVDEYQDTNVAQYLWLRLLAQAPSSPKNSSILRDAALRAAPQHDGAETIAS
AGTDLVPHPEERGQGPRVSKGEAEPPAASSPPKNICCVGDDDQSIYGWRGAEVDNILRFD
HDFPGAKIIRLERNYRSTGHILAAASHLIAHNEGRLGKTLRTEDVDGEKVTVTGSWDSEE
EARAIGEEIEQLQRDGHKLNDIAILVRASFQMREFEDRFVTLGLPYRVIGGPRFYERAEI
RDALAYLRVINSPADDLAFERIVNVPKRGLGDATVQLLHDHARKRKIPLTEAARAIVDSD
ELKPKARGSLRELMTSFERWRMQREVKTHTELAEIVLDESGYTEMWQKDRSADAAGRLEN
LKELVRSMEEFENLQGFLEHISLVMDREGGADDDAVSVMTLHSAKGLEFDSVFLPGWEEG
LFPHQRALDEQGRAGLEEERRLAHVGITRARKRAKLYFASNRRIHGTWNTTLPSRFLDEL
PADHVEITESKGGSGWGGAGGYGSSRFDNMESFGSSYTTPGWQRAQANRAKNSRGGGSNG
FSEEQSPFSSSRGESDHFAKKRAPLTIEGELVAKSTGAASDYALKDRVFHQKFGYGQVVR
VDGNKLTIAFDKAGEKKVVDSFVERV
NT seq
2601 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacccgaccaataaacgcctcgccaacgacctgcccggctaccagcccgccgcg
ggcggcatcgccgcgcgggctcgcgcccaggcgatgccggcctatctcgccggcctcaat
cccgagcagagcgacgcggtgcagacgctggacggcccggtgctggtgctggccggcgcc
ggcaccggcaagacccgggtgctgacctcgcggatcgcccatatcctgtcctcgggccgc
gcccgccccggcgaaatcctctcggtgaccttcaccaacaaggccgcgcgcgagatgaag
ctacggctggggcaaatgctcggccaagccgtcgagggcatgccgtggctcggcaccttc
cattcgatcggcggccgcatcctgcgctatcacgccgagctggtgcagctgacctccaac
ttcaccgtgctcgacaccgacgaccagatccggctgttgaagcaattgctcgccgccgac
aatatcgacgacaagcgctggccggcgcggatgctggccggcttgatcgacggctggaaa
aatcgcgggctgacgccgtcgcaggtgccggccggcgaagccgcggtgttcggcaacggc
cgcggcggcaagctctacgccgcctatcaggagcggctgaaggtgctgaacgcggcggat
ttcggcgatctgttgctggaggacatccggctgttccgcgaacatcccgacgtgctgcgg
cagtatcagcaacgcttcaagtacatcctggtcgacgaatatcaggacaccaacgtcgcg
caatatctctggctgcggctgctggcgcaggcgccgtcgtcgccaaagaattcctccatc
cttcgagacgccgcgctgcgcgcggctcctcagcatgacggtgcagagactatcgccagc
gcaggcactgacttagtccctcaccctgaggagcgcgggcaaggcccgcgcgtctcgaag
ggcgaggccgagccgcccgccgcatcctcgccgccgaaaaacatctgctgcgtcggcgac
gacgatcagtcgatctacggctggcgcggcgccgaggtcgacaacatcctgcgcttcgac
cacgacttccccggcgcgaaaatcatccggctggagcgcaattatcgctccaccggccac
atcctcgccgccgcctcgcatctgatcgcgcacaatgaaggccggctcggcaagacgctg
cgcaccgaggacgtcgacggcgagaaggtcaccgtcaccggctcgtgggattccgaagag
gaagcccgcgcgatcggcgaagagatcgagcagctgcagcgcgacggccacaagctcaac
gacattgcgatcttggtgcgcgcctcgttccagatgcgcgaattcgaagatcgtttcgtc
acgctcggcctgccctaccgggtgatcggcggcccgcggttctacgagcgcgccgaaatc
cgcgacgcactggcttacttgcgggtgatcaattcgccggccgacgacctcgccttcgag
cgcatcgtcaacgtgccgaagcgcgggctcggcgacgccaccgtgcagctgctgcacgac
catgccaggaagcgcaagatcccgttgaccgaagccgcgcgcgcgatcgtcgacagcgac
gaattgaaaccgaaggcccgcggcagcctgcgcgagctgatgacctcgttcgagcgctgg
cggatgcagcgcgaggtgaagacgcataccgaactcgccgagatcgtgctcgacgagagc
ggctacaccgagatgtggcagaaggaccgctccgccgacgccgccggccggctggagaac
ttgaaggaattggtccgctcgatggaagagttcgagaacctgcagggctttctcgaacat
atctcgctggtgatggaccgcgagggcggcgccgacgacgacgcggtgagcgtgatgacg
ttgcattccgccaagggcttggaattcgacagcgtgtttctgccgggctgggaagaaggg
ctgtttccgcatcagcgcgcgctcgacgaacagggccgcgccgggctcgaggaagagcgc
cgcctcgcccatgtcggcatcacccgcgcccgcaagcgggccaagttgtacttcgcctcc
aaccggcggattcacggcacctggaacacgacgctgccgtcgcgctttctcgacgaactg
ccggccgatcatgtcgagatcaccgaatccaagggcggctccggctggggcggcgccggc
ggctacggctcgtcgcggttcgacaatatggaatccttcggctcgagctacaccacgccg
ggctggcagcgcgcccaggccaaccgtgccaagaacagccgcggcggcggaagtaacggc
ttcagcgaagagcagtcgccgttctcgtcgtcacgcggcgagtcggatcatttcgccaag
aagcgcgcgccgctgaccatcgagggcgagttggtggcgaaatccactggtgcggcgtcg
gactatgcgctgaaggaccgggtgtttcaccagaagttcggctacggccaggtggtgcgg
gtcgacggcaacaaactcaccatcgccttcgacaaggccggcgaaaagaaggtggtcgat
agtttcgtggagcgggtgtag
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