Rhodopseudomonas palustris BisB5: RPD_3160
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Entry
RPD_3160 CDS
T00345
Name
(GenBank) DNA-directed RNA polymerase, alpha subunit
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
rpd
Rhodopseudomonas palustris BisB5
Pathway
rpd03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rpd00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
RPD_3160
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rpd03021
]
RPD_3160
03400 DNA repair and recombination proteins [BR:
rpd03400
]
RPD_3160
Enzymes [BR:
rpd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
RPD_3160
Transcription machinery [BR:
rpd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
RPD_3160
DNA repair and recombination proteins [BR:
rpd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
RPD_3160
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
HHH_XRCC3_RpoA
IDH
Motif
Other DBs
NCBI-ProteinID:
ABE40386
UniProt:
Q134V3
LinkDB
All DBs
Position
complement(3512678..3513697)
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AA seq
339 aa
AA seq
DB search
MTIQKNWQELIRPNKLQVSPGSDATRFATLVAEPLERGFGQTLGNALRRVLLSSLQGAAV
QSVQIDGVLHEFSSIAGVREDVTDIVLNIKDISLKMQGEGPKRMVVKKQGPGVVTAGDIQ
TVGDIVVLNPDLQICTLDEGAEIRMEFTVNTGKGYVAAERNRPEDAPIGLIPVDSLYSPV
RKVSYKVENTREGQILDYDKLTMTVETNGALTPDDAVAFAARILQDQLNVFVNFEEPRKE
VTQEIIPDLAFNPAFLKKVDELELSVRSANCLKNDNIVYIGDLVQKSEAEMLRTPNFGRK
SLNEIKEVLAQMGLHLGMEVPGWPPENIDELAKRFEDHY
NT seq
1020 nt
NT seq
+upstream
nt +downstream
nt
gtgacgatccagaaaaattggcaagaactgattcgaccgaacaagcttcaggtttcgccg
ggcagtgatgcgacgcggttcgcgacgctggtcgccgagccgctcgagcgcggcttcggc
cagacgctgggcaacgcgctgcggcgcgtgttgctgtcctcgctgcagggcgctgcggtg
cagtcggtgcagatcgacggcgtgctgcacgagttctcctcgattgccggcgtgcgcgag
gacgtcaccgacatcgtgctgaacatcaaggacatctcgctgaagatgcagggcgaaggc
ccgaagcggatggtcgtcaagaagcagggtccgggcgtcgtcaccgccggcgacatccag
accgtcggcgatatcgtcgtgctgaaccccgacctgcagatctgcaccctggacgagggc
gcggagatccgcatggagttcaccgtcaacaccggcaagggctacgtcgccgccgagcgt
aaccgtcccgaggacgcgccgatcggcctgatcccggtcgacagcctgtactcgccggtt
cgcaaggtgtcgtacaaggtcgagaacacccgcgagggccagatcctcgactacgacaag
ctgaccatgacggtcgagaccaacggcgcgctgacgccggatgacgcggtggccttcgcc
gcccgcatcctgcaggatcagctcaacgtcttcgtcaacttcgaagagccgcgcaaggaa
gtcacccaggagatcattccggatctcgccttcaacccggctttcctcaagaaggtggac
gagctcgagctgtcggtgcgttcggcgaactgcctgaagaacgacaacatcgtctatatc
ggcgatctggtgcagaagtcggaagcagagatgctgcgcactccgaacttcggccgcaag
tcgctgaacgagatcaaggaagtgctggcgcagatgggcctgcatctcggcatggaagtg
ccgggctggccgccggagaacatcgacgagctcgccaagcgtttcgaagatcactactga
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