Ralstonia pickettii 12D: Rpic12D_4574
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Entry
Rpic12D_4574 CDS
T00925
Name
(GenBank) excinuclease ABC, A subunit
KO
K03701
excinuclease ABC subunit A
Organism
rpf
Ralstonia pickettii 12D
Pathway
rpf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rpf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Rpic12D_4574
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rpf03400
]
Rpic12D_4574
DNA repair and recombination proteins [BR:
rpf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Rpic12D_4574
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Rpic12D_4574
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
UvrA_inter
AAA_29
AAA_21
AAA_16
SMC_N
nSTAND1
RsgA_GTPase
AAA_22
AAA_33
AAA_25
AAA_18
Viral_helicase1
AAA_23
NACHT
UvrA_DNA-bind
nSTAND3
DnaJ_CXXCXGXG
SbcC_Walker_B
DUF4350
Anti-TRAP
RNA12
DUF87
Motif
Other DBs
NCBI-ProteinID:
ACS65814
UniProt:
C6BP06
LinkDB
All DBs
Position
2:1211467..1217316
Genome browser
AA seq
1949 aa
AA seq
DB search
MSSGVIRLRGARQHNLKNLDLDLRTGEMTVVTGPSGSGKSSLVFDTLYAEGQRRYVETFS
AYARQFLDRMDRPQVEHVEGVPPAIAIDQTNPVRSSRSTVGTMTELNDHLKLLFARAAQL
FDRDTALPVRHDTPETIYDELLSRTRDGDPRLVVTFPVELPANTSPEEVTQWLSVSGYTR
VQAERVVESSTGKRKLLDVVADRFRLQGTERARALEAIESSLKRGGGRVSVYVLPADEGA
EPTIWRFSTGLHCPESDLRYADPQPALFSFNSAYGACDTCRGFGRVIGVDLGLVIPDERK
TLRDGAIKPMQTPAWKECQDDLMRYAAAADIPRGTPWTEMTEAQRNWVINGDPAFKRGGW
NKQWYGVRRFFDYLESKAYKMHIRVLLSKYRSYTTCETCGGARLKTESMQWRLGTKENAD
AVLAPEHRFMPRGVAWSRTQLEALPGLTVHDLMLLPIERIRRFFDELTLPSTLLDDALKL
LLDEVRTRLAYLCDVGIGYLTLDRQSRTLSGGEVQRINLTTALGTSLVNTLFVLDEPSIG
LHPRDLDRIVEAMQRLRDAGNTLVVVEHDPSVMLAADRLIDMGPGPGERGGNIVFDGTPA
AIRQADTLTGAYLSGQRRVADATDWQARPVTDATPRLVLEGASEHNLRDVTVEVPLQRLV
CVTGVSGSGKSTLIQDVLHPALARHFGKATESPGAFRALRGADQISDVVFVDQSPIGKTA
RSNPASYVGAFDEIRKLFAKAPMALQRGYTAGTFSFNSGDGRCPTCGGSGFEHVEMQFLS
DIYLRCPDCDGTRYRAEILEVKLPRAGRALSVADVLELTVSEAASVFAEDADVLRVLQPI
VDVGLEYVKLGQPVPTLSGGEAQRLKLAGFLAEAAQAAQAAARKRVKQDVPANAGRLFMF
DEPTTGLHFDDIAKLMRAFGKLLDAGHSLIVIEHNLDVVRAADWIIDLGPEGGDAGGLLV
CAGTPAQVKDCAASHTGAALKQYEASVGQPEAIEGVPLQTALAERRAKRAALAEVQGENV
VRIVHAHEHNLKGLNVDIPHGKFNVVTGVSGSGKSTLAFDILFHEGQRRYLESLNAYARS
IVQPAGRPEVDAVYGIPPTVAIEQRLSRGGRKSTVATTSEVWHFLRLLYVKLGVQHCIHD
GTPVSAQSPEAIFAQLIRDHRGQHIGLLAPLVLNRKGVYTDLAKWAKARGYTHLRVDGEF
LSVDPWPRLDRFREHTLELPVGDIVVSPENEAALRALLEQALEYGKGIMHVLAPLDGLQS
AMHKGGTAHVGSVKVFSTKRACSTCGTSYPELDPRMFSYNSKHGWCASCVGTGLALTREQ
RAAFDDTVLGGDDRGREQTLPSEEVDPEGMTDLPCPDCNGTRLNPTARAVTFADRPIVDI
AQWTVSQTRRWVEGLDLTGRDADIARDVVAEIHSRLSFLEEVGLGYLSLDRAAPSLSGGE
AQRIRLAAQLGSNLQGVCYVLDEPTIGLHPRDNQILLDALRKLGDKGNTLVVVEHDEDTI
RRADHIIDIGPGAGKRGGTLVAQGGVQDLAAQPDSLTGRFLSQPIEHPLQPRRQVVAPRG
GTQAVPEQWLTVHGAKLHNLRNVTATMPLSRLVAITGVSGSGKSTLARDVLMTNLLDAVG
RSVLSSPATRRARKAAQAEAPEAKMPRKLDVKHDWHGCDSVIGWETIDRVLEVDQTPIGK
TPRSCPATYIGVWDTIRKLFADTLEARARGYTASRFSFNTGDGRCPACEGQGVRTIAMSF
LPDVKVGCDVCHGQRFNAETLAVTWRGKNIGDVLTMEIDEAVEFFGAMNSIAHPLQLMKD
VGLGYLTLGQPSPTLSGGEAQRIKLVTELSKVRDDVTRRGQKPPHTLYVLDEPTVGLHMA
DVAKLIRVLHRLADGGHSVIVIEHDLDVIAEADWILDLGPEGGDEGGTIVAACGPEALTR
VAASHTGAALVPVLARGKQVDPSKEGETV
NT seq
5850 nt
NT seq
+upstream
nt +downstream
nt
atgtcctccggtgtcattcgcctgcgcggagcccgtcagcacaatctcaaaaacctcgat
ctggacctccgtacgggcgaaatgaccgtcgtgaccggcccgtcgggctccggcaagtcc
agcctcgttttcgacacgctctacgccgaaggccagcgccgctacgtcgagaccttcagc
gcctatgcgcgtcagttcctcgaccgcatggaccggccgcaggtcgagcacgtcgaaggc
gtgccgcccgccatcgccatcgaccagaccaaccccgtgcgcagctcgcgctcgacggtc
ggcacgatgacggaactgaacgatcacctgaagctgctgtttgcgcgcgccgcccagctg
ttcgaccgcgacaccgcgctgccggtgcgccacgacacgccggaaacgatctacgacgag
ctgctctcgcgcacgcgcgatggcgatccacgcctggtggtgacctttcccgtcgaactg
cccgccaatacgagccctgaagaagtcacgcaatggctgtcggtcagcggctatacgcgc
gtgcaggccgagcgcgtggtggagtcctccacgggcaagcgcaagctgctcgatgtggtg
gccgaccgcttccgtctgcagggcaccgagcgtgcccgcgcgctggaggccattgagtcg
tcgctcaagcgcggcggcgggcgcgtcagcgtgtatgtcttgccggccgatgaaggtgcg
gagccgaccatctggcgcttttccaccggcctgcactgccccgaaagcgacctgcgctac
gcagacccgcaacccgctctcttctcgttcaattccgcttatggcgcgtgcgatacctgc
cgtggtttcggccgcgtgatcggcgtcgatcttggactggtgattccggacgagcgcaag
acgctgcgcgacggtgccatcaagccgatgcagacgccggcctggaaggaatgccaggac
gatctgatgcgctatgccgccgcagccgacatcccgcgcggcacgccgtggacagagatg
accgaagcccagcgcaactgggtcatcaatggagacccggccttcaaacgcggcggctgg
aacaagcagtggtacggcgtgcgccgcttcttcgactacctggagtcgaaggcctacaag
atgcacatccgcgtgctgctctccaagtaccgcagctacacgacctgcgaaacctgcggc
ggtgcacgactgaaaaccgagtcgatgcagtggcgcctgggcaccaaggaaaacgccgac
gccgtgctcgcacccgaacaccgcttcatgccgcgcggcgtggcctggagccgcacccag
ctcgaagccttgcccgggctgaccgtgcacgacctgatgctgctgccgatcgagcgcatc
cgccgtttcttcgatgaactgacgctgccgtccacactgctcgacgacgcgctcaagctg
ctgctggacgaggtgcgcacacggctggcgtatctgtgcgacgtgggcatcggctacctg
acgctcgatcgccagagccgcacgctgtcgggcggggaagtgcagcggatcaacctgacg
acggcgctgggcacatcgctcgtcaacacgctgttcgtgctggatgaacccagcatcggc
ctgcacccgcgcgatctggatcgcattgtcgaagccatgcagcgcctgcgcgacgcgggc
aacacgctggtggtggtcgagcacgatccgtccgtaatgctggctgcggaccgcctgatc
gacatggggcccggccccggcgagcgtgggggcaacatcgtctttgacggcacgcctgcg
gccatccgtcaggccgatacgctcacgggcgcgtatctgtcggggcagcgccgcgtggcc
gacgccacggattggcaggcgcgccccgtcaccgacgccacgccgcggctggtgctcgaa
ggcgcgtcggaacacaacctgcgcgatgtcacggtggaagttccgctgcagcgcctggtg
tgcgtgaccggcgtgtccggctcgggcaaatcgacgttgatccaggacgtgctgcacccg
gcgctggcgcggcatttcggcaaggcaacggaatcgcccggcgcattccgcgccttgcgc
ggtgccgatcagatcagcgacgtggtgttcgttgaccaatccccgatcggcaagaccgcg
cgttcgaacccggccagctacgttggcgcgtttgatgaaatccgcaagctgtttgccaag
gcgccgatggcgctgcagcgcggctacacggccggcacgttcagcttcaactcgggcgac
ggccgttgcccgacctgcggcggctcgggcttcgagcacgtcgagatgcagttcctctcc
gacatctacctgcgctgcccggattgcgacggcacgcgctatcgcgccgaaatcctggaa
gtgaagctgccgcgtgccggccgcgcattgtccgtggccgatgtgctggaactgacggtg
agcgaagccgccagcgtgttcgccgaagacgccgacgtgctgcgcgtgctgcaaccgatc
gtcgacgtgggcctggaatacgtgaagcttggccaaccggtgccgacgctctccggcggc
gaggcccaacgcctgaagctggcgggcttcctggccgaagccgcgcaggccgcccaggcc
gcggcgcgcaagcgcgtcaagcaggacgtgcccgccaacgccggccgcctgttcatgttc
gacgagcccaccacgggcctgcactttgacgacatcgccaagctgatgcgggcgttcggc
aagctgctcgacgccgggcattcgctgatcgtgatcgaacacaacctcgacgtggtgcgt
gcggcggattggatcatcgacctcggccccgagggcggcgacgccggcggcctgctggtc
tgcgccggcacgcctgcgcaggtcaaagactgcgctgcatcgcacacgggcgccgcgctc
aagcaatacgaagccagcgttggtcagccggaagccatcgaaggcgtgccgctgcagacg
gcactggccgagcgccgcgccaagcgcgctgcgctggcggaagtccagggcgaaaacgtc
gtgcgcatcgtccacgcccacgagcacaacctcaagggcctgaacgtcgacattccgcac
ggcaagttcaacgtggtgacgggcgtatcgggttcgggcaagtcgacgctggcgttcgac
atcctcttccacgaggggcagcgacgctatcttgaatcgctcaacgcgtatgcacgttcc
atcgtgcagcccgcggggcggccggaagtcgatgccgtctatggcattccgcccaccgtg
gcgattgagcagcgcctgtcgcgcggcggccgcaagagcacggtggcgaccacgtccgag
gtgtggcacttcctgcgactgctgtatgtgaagctcggcgtgcagcactgcatccacgac
ggcacgccggtgtcggcgcaaagcccggaggcgatctttgcgcagctcatacgcgatcat
cgcggccagcacatcggcctgcttgcgccgctggtcctgaaccgcaagggcgtctatacc
gaccttgccaaatgggccaaggcccgcggctatacgcatctgcgcgtcgatggcgaattc
ctgagcgtcgacccgtggccgcgcctggaccgcttccgcgagcacacgctggaactgccc
gtcggcgacatcgttgtctcgccggaaaacgaggccgcgctgcgtgcgttgctggagcag
gcgctggagtacggcaagggcatcatgcacgtgctcgcgccgctggatggcctgcagagc
gccatgcacaagggcggcacggcgcacgtgggcagcgtcaaggtcttttcgaccaagcgc
gcgtgctcgacctgcggcaccagctaccccgagctggatccgcgcatgttctcgtacaac
agcaagcacggctggtgcgcgagctgcgtcggtaccgggctggcgctcacgcgcgaacag
cgcgccgcgtttgacgacaccgtgctcggcggagacgatcgcggccgcgagcagacgctt
ccttcagaggaagtcgatcccgaaggcatgaccgacctgccctgcccggattgcaacggc
acgcgcctgaacccgacggcgcgcgccgtcacctttgccgacaggcccatcgtcgacatt
gcgcagtggacggtcagccagacccgccgctgggtcgagggcctggacctgaccggccgg
gacgccgacatcgcccgcgatgtggtggccgagattcacagccgcctgtcgttcctggag
gaagtcggcctgggctacctgagcctggatcgcgccgcgccaagcctgtcgggcggtgaa
gcccagcgtatccgcctggctgcgcaactcggcagcaacctgcaaggcgtgtgctacgtg
ctggatgagccgaccatcggcctgcatccgcgcgacaaccagatcctgctcgacgcgctg
cgcaagctgggcgacaagggcaacacgctggtggtggtcgagcatgatgaagacaccatc
cgccgggccgaccacatcatcgacatcggcccgggtgccggcaagcgcggcggcacgctg
gttgcgcaaggcggcgtgcaggatctggccgcgcagccggattcgctcacgggccggttc
ctgtcgcagccgatcgagcatccgctgcagccccgccgccaggtggttgcgccgcgcggc
ggcacgcaggcggtgccggagcaatggctgacggtgcacggcgccaagctgcacaacctg
cgcaacgtcaccgcgacgatgccgctgtcgcgtctggtggcgattacgggcgtttcgggc
tcgggcaaatcgacgctggcgcgtgatgtgttgatgacgaacctgctcgatgcggtcggc
cgttcggtgctgtcttcgccggctacgcggcgcgcacgcaaagccgcgcaggcagaggcg
ccagaggcgaagatgccgcgcaagctcgacgtcaaacacgactggcacggctgcgacagc
gtcatcggctgggaaaccatcgaccgcgtgctggaagtcgaccagacgccgatcggcaag
acgccgcgctcctgccccgccacgtacatcggcgtgtgggacaccatccgcaagctcttt
gccgacacactcgaggcgcgggcacgcggctacaccgcctcgcgcttctcgttcaacacc
ggcgacggccgctgccctgcctgtgaaggccagggcgtgcgcaccatcgccatgagcttc
ctgcccgacgtgaaggtcggctgcgacgtctgccacggccagcgcttcaatgcagaaacg
ctggccgtcacctggcgcggcaagaacatcggcgatgtgctgaccatggagatcgacgaa
gcggtcgaattctttggtgcgatgaacagcatcgcccacccgctgcagttgatgaaggac
gtgggcctcggctacctgacgctgggccagccctcgcccacgctgtccggcggcgaggcg
cagcgcatcaagcttgtcaccgagttgtccaaggtgcgcgacgacgtgacgcgccgcggc
cagaagccgccccacacgctctacgtgctggacgagccgacggtgggcctgcacatggcc
gacgtggccaagctcattcgcgtgctgcatcgcctggcggacggtggccacagcgtgatc
gtgatcgagcacgaccttgatgtgattgccgaggcggactggattctcgatctcggcccc
gaaggcggcgatgaaggcggcacgatcgtcgcggcttgcgggccggaggcgttgacgcgc
gtggcggccagccatactggcgcagcgttggtgccggtgctggcgcgcggcaagcaggtc
gatccgagcaaggaaggcgagacggtctag
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