Ruditapes philippinarum (Manila clam): 132716695
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Entry
132716695 CDS
T09557
Name
(RefSeq) putative ATP-dependent DNA helicase Q1
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
rphi
Ruditapes philippinarum (Manila clam)
Pathway
rphi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
132716695
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rphi03019
]
132716695
03400 DNA repair and recombination proteins [BR:
rphi03400
]
132716695
Enzymes [BR:
rphi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
132716695
Messenger RNA biogenesis [BR:
rphi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
132716695
DNA repair and recombination proteins [BR:
rphi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
132716695
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
Motif
Other DBs
NCBI-GeneID:
132716695
NCBI-ProteinID:
XP_060556000
LinkDB
All DBs
Position
Unknown
AA seq
424 aa
AA seq
DB search
MAEVKQLLNDCAKDFDPALVLKSKQIECFEHILSGKDVIVNLPVGYGKSLVYQLLPGIMK
KKGLTKNVVLVVSPLNIIQEEQLNFLGSRGVTACRLPYSDKEPDVDMDLSKILENSVIFA
HPEALLNTDFGKSLLQDRAFIDAVAAVTIDECHIVEEWGAEFRTAYKKLKMLPAIFDRIP
FIALSGTLTKDQMRTLPDILGLLCPALVQETPDRTNIFLSKIMKVKSSDMCGVYEEIFKE
ECELLHKDPKIYPITLMFMPLYYISQAAAYLMHLFGPCDITKSCYSVLYSRQEKAVIKAT
VEELYLPQPRIRLVLTSSVAGMGFDPPCIERVIHAKPPRSLSQYLQEIGRAGRRGQPSKA
ILYCNKQDVAKNLPGIQDNIVEYCNNDVKCLREMLLEPFGFLKSDNIDGDKCCSYCKKQT
SCTK
NT seq
1275 nt
NT seq
+upstream
nt +downstream
nt
atggctgaagttaaacagttactgaacgattgtgcaaaggattttgatccggcacttgtt
ttaaagagtaagcaaattgagtgctttgaacatattttatctggtaaggatgtaattgta
aatctgccagttggatacgggaaaagccttgtttaccaattgttgccaggcatcatgaag
aagaaggggttaacaaagaatgttgtattggtcgtatcccccttaaatataatacaggag
gagcagttaaattttttaggatctcgcggtgtcacagcatgtaggttaccatacagtgat
aaggaaccagacgttgacatggatttgtcaaaaattcttgaaaattcagtcatatttgca
cacccagaggccttgttaaatactgactttgggaagtcacttctccaagacagggctttc
atagatgcagtggcagcagtgacaatagatgaatgtcacattgttgaggaatggggagcg
gagttcaggacagcttacaaaaaactaaagatgttgccagcaatatttgatagaattccc
ttcattgccttaagtgggacccttaccaaagatcaaatgaggacattaccagacatcctt
ggcttactttgtcctgcgttagtacaggaaaccccagatagaaccaatatatttctttca
aaaatcatgaaagtgaaaagtagtgatatgtgtggggtgtatgaggaaatctttaaagaa
gagtgtgaattacttcacaaagaccctaaaatttatccaataacactaatgtttatgcca
ttatattacatcagccaagcagcagcatacttaatgcatctctttggaccttgtgacata
acaaagtcttgttactctgtgttgtattctaggcaggaaaaggcagtaattaaagcaaca
gtagaagaattgtatttaccccaacccagaattcgtttagttcttacatcatcggttgct
ggtatgggctttgatcctccttgcattgagagagtgatccatgccaaaccaccaagaagt
ttgtctcagtacctgcaggaaataggacgggccggtagaagaggacaacccagtaaagcc
attctctattgtaataaacaagatgttgctaagaatttaccaggtatccaggacaatatt
gttgaatactgtaacaatgatgtaaagtgtctccgtgaaatgctgctggaaccatttgga
tttttgaaatctgacaatattgatggtgacaaatgttgttcatattgcaaaaaacagaca
tcttgtacaaagtaa
DBGET
integrated database retrieval system
