Ruditapes philippinarum (Manila clam): 132719019
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Entry
132719019 CDS
T09557
Name
(RefSeq) telomerase-binding protein EST1A-like
KO
K11124
protein SMG6 [EC:3.1.-.-]
Organism
rphi
Ruditapes philippinarum (Manila clam)
Pathway
rphi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
132719019
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rphi03019
]
132719019
03032 DNA replication proteins [BR:
rphi03032
]
132719019
Messenger RNA biogenesis [BR:
rphi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
132719019
mRNA cycle factors
Common to processing body (P body) and stress granule
132719019
DNA replication proteins [BR:
rphi03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
132719019
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EST1_DNA_bind
PIN_4
EST1
TPR_12
Motif
Other DBs
NCBI-GeneID:
132719019
NCBI-ProteinID:
XP_060558740
LinkDB
All DBs
Position
Unknown
AA seq
1642 aa
AA seq
DB search
MAAESDVVRITYKELEDIAQSNEEKEEEEKNRKIKEEDKKKRDQEKKAKRPSKGIYRPPH
RAISDKQTDHGSEKESSPEKVGSKAAETELYISEENWENELVSDSSSKENSVEKELAAVN
SGIQDMKVTPGDHQRNRRSEESRRKKKPEMPRYVPKGRLEKQQQQQPVTDASGEGSGDWE
DDMSSPSPNTVHSPSPGPTTSALLHAPQSPSPRKIDLKNMQVTVVNNKSDTGNRVTPEKN
VEQPVKTGNRNTRNNEQDYAKGQRGHGQSYSRGRGQRHNQRSNVRQNDGRNNRGLVGNRN
ETKEQRSKVDNREIKQENVAPKQDDKPNVDNKQSKDVKNDQELYIVPSRPSTIGQEADRK
DTAPVGMEENKNKIDEKPGINKQQILERFRRTPNKTKSRSYDKLNQSERFEDEDGYYPDP
QNLGTMVFERSHSSEQLNLSGRNVGKPPMPRSSSGSGAKNVPRKHGFSGMRKRTDSISSD
LSTGTGSDWSTEELDFDKELDSSNKIDWNEDFEREYAFSTLCASQVQGETQKMNEWFERQ
ELGLSQDDNLSQNDGKVNRSNNAKTDIMTSSTPGYLPGFPVKSDTWSERSSTLPLPKKKQ
KEEPRGRTDRRRGSLGTFCCYLKSVVSLSVLEAEIPVFGPIFYRVSSVQSLTVEPGRPRR
RRRQNFDKLSRDRDYRHEDEEKTNEQQPHGGGILHIPPQPKEPETISHPAPHHNKAGPHQ
HQGWGRGHTPERGGSHARERQHSGSSHRQKTLFDPNNPSKPIVIEEAKPKLDFKDTDSYP
SSPQSPQYMGSAPPYMGYGPGPGQFYPPGYGYGYNMPQMMPPHPGMLDPYGYHAQQGAYR
ESSPYQEDPYYQGGMDIEQQMATGRSRSQCRMMAEQLLREAIPLDKQLNSLISRRIGGED
TIHMINNLRYDLILDFLFLRKCRAIIIAKVLLLGKMQSTFNFDLSKFLDPHTLSPENLSR
ANKLALLSCQRTMICLGDIARYKEQNNDGGKVNYAKARSWYSKAQQIAPKNGRPYNQLAI
LALYTKHKLDAVYYYMRSLAASNPFITARESLMSLFNEARKKAEVNEKQRFEERKKQEGL
RKHANVTQHRMEIWVKNDGTSSQSKVDDNYDEDLSKLDTVQLNKRFVLSFLNVHGKLFTK
IGMEIFPDSCGQMLHEFKALLKVNAIGPQRLLQLMAINMFAIENTALKDESLESTCRSLL
QQHSVQMGLDMFGILVQRCAQLLAVHTKSSDYPGRMFSRELEELIPGIKVWTNWMICHAD
LWNPPPQVRDPALGPDIDVWVCTSTLCNILKEMDTSIIKFYTEKSEGLEAVILSEDIMMS
GFVPLLTTPLTSTFVEDTVDKDMARDCLRVEKLRVFGEYLCGVEPPMLAYSAETKKYYSV
APSDGYENDEPRGDDQDEAELSEEEDVVIEDEEIIHMEEAGDQHVQHLKARKEELEKRME
EKKRLHEHRKKVIETNRHSCIEIEIRPIFLIPDTNCFIDHLPSINKLISDRQYTIVIPLV
VINELDGLAQGQRMKGQYDNEDHANKVKHRAANTIEMLEKEFEKKNSHLKALTSKGTVME
TISFRSEETDSSGNNDDLILSCCTYYCKDIARDYMPKDKDAPVRLHREVVLLTEDRNLRL
KAHTHNVPVKDLPAFMKWSSAT
NT seq
4929 nt
NT seq
+upstream
nt +downstream
nt
atggccgctgagtcagatgttgttagaataacgtacaaggaattagaagatattgctcaa
tcaaatgaagaaaaagaagaggaagaaaagaatagaaagattaaagaagaagacaagaag
aaaagagaccaggaaaagaaagcaaagaggccatcaaaaggtatctatagaccacctcac
agagcaatatcagacaagcaaactgatcatggaagtgaaaaagaatccagtccagagaag
gtagggagtaaagctgcagaaactgagctgtatatatcagaggaaaactgggagaatgaa
ctggtatctgattcctcatcaaaggaaaacagtgtggaaaaagagctggcagcagtaaat
tctggtatccaagacatgaaagtgacacctggtgatcatcagaggaaccgtagaagtgag
gaatcgagacggaaaaagaaaccagaaatgccgcgctatgttccaaaaggtcgactggaa
aaacagcaacagcagcagccggtcactgatgccagcggggaaggctctggcgactgggag
gacgatatgtctagtccaagtcctaacacagtccatagtccgagtcccgggccgacaact
tctgctcttctacatgctccccagtcaccatcaccgaggaaaatagatctgaaaaatatg
caagttactgttgttaataataaatcagatactggtaacagagttacaccagagaaaaat
gttgagcaaccagtcaaaaccggtaacaggaataccagaaacaatgaacaagactatgct
aagggtcaaagaggtcacggtcagtcatattcaagaggtcggggtcaaagacataatcaa
aggtcaaatgtcagacaaaatgatggaagaaataatagaggtcttgttggaaatagaaat
gaaacaaaagaacagaggtcaaaagtggataatcgtgaaattaaacaggaaaatgtagcg
ccaaaacaggatgataaaccaaatgtagacaataaacaaagcaaagatgtgaaaaatgat
caagaattatatatagtgccatcaagaccaagcacaattggtcaggaggcagacagaaaa
gatacagcgccagttggcatggaagaaaataaaaacaagattgacgaaaagcctggcata
aacaaacagcaaattttagaaaggttccgaagaacaccaaataaaactaaatcacgatcg
tatgacaagttgaatcagtctgagagatttgaagatgaggacgggtactacccggaccca
caaaatctcggtaccatggtatttgagagaagtcatagctccgagcaacttaatctgagt
ggacgtaatgttggaaaaccgccaatgccaaggagcagttcaggaagtggagcaaagaat
gtgcctagaaagcacgggttttccggaatgaggaaaagaacagatagtataagcagtgat
ttgagtacaggtacaggaagtgactggagcacggaagaactggactttgataaggaattg
gatagtagcaataagattgactggaatgaggattttgagcgagaatatgcatttagtact
ctgtgtgctagccaggtccagggtgaaacacagaaaatgaacgaatggtttgagcgtcag
gaactcggtttgtcccaggatgataatctttcacagaatgacgggaaggtgaaccgctca
aataacgcgaaaactgatataatgacttcaagtacgcctggttacctgccgggttttccg
gttaagtctgatacctggtcggagaggtcaagtacattgccattaccaaagaagaaacag
aaagaagagccacgagggagaacggatcgtagacgaggttctcttggtacattttgttgt
tacttaaaaagtgtagtcagcttatcagttttagaagccgagattcccgtgttcgggccc
atattttacagagtgtcaagcgtacaaagtcttacagtggagcccgggcgccctagaaga
agacggaggcaaaattttgacaagttatccagagacagggattataggcatgaggatgaa
gaaaaaacaaatgaacaacaacctcatggaggtggaatcttacatatcccacctcaacca
aaagagccggaaaccatttctcatccagctccacaccacaacaaagctggtccacatcaa
caccaaggctgggggcggggacataccccagaaaggggagggtcccatgcaagagaaaga
cagcattcagggtctagtcataggcagaaaactttatttgatcccaacaatccaagtaaa
ccaatagtaattgaagaagctaaacccaaactggattttaaagacacagattcatacccc
tcatcaccccagtcacctcaatacatgggttcagcccccccttatatgggatatgggccg
ggcccaggacagttttatcctcctggttatggctatggatataatatgccccaaatgatg
ccgcctcacccaggaatgcttgacccatatgggtaccatgcccagcaaggtgcttacagg
gaatcgtctccatatcaggaagatccttattatcagggaggtatggacatagaacaacag
atggcgacaggccgcagcagatctcagtgtcgtatgatggcggaacagttactgcgagaa
gctataccactagataaacaactcaatagtcttatatctagacgtataggtggggaagac
acaatacacatgatcaataatttaaggtatgatcttatattagattttctgtttctaaga
aaatgtcgagctattataattgctaaagttttacttttagggaaaatgcaatcgaccttc
aactttgacctcagcaagtttttagaccctcatacattatctccagagaatctgagccgc
gcgaacaaattagcgttacttagttgtcagagaacaatgatatgtcttggtgatatagcc
agatacaaggagcagaataatgatggcgggaaagttaattacgcaaaagctagaagttgg
tacagcaaggcacaacaaattgctcctaagaatggcagaccctacaatcagctggctatt
ctagctctatatacaaaacacaaattggatgcagtgtattattacatgagaagtttggcg
gccagtaacccatttatcactgctagagaaagtttaatgtctttattcaatgaggcaagg
aagaaggcagaggtcaatgagaaacagcgttttgaggagagaaagaaacaagagggtttg
aggaagcatgctaacgttacacaacatcggatggagatctgggtgaaaaatgacggcaca
agtagccagtcgaaagttgatgataattatgatgaagatctgtccaaactggacactgta
cagttaaacaagagatttgttctcagtttcctaaatgtacatggaaaactctttacaaaa
attggaatggagatatttcctgacagttgtggtcaaatgttacatgagtttaaagcacta
ctcaaagtgaatgcaataggaccacagcgtcttctacaactgatggcaataaatatgttt
gctatagaaaacacagctttaaaagatgagtcactagaatcaacatgtagatctctgtta
caacaacattctgtacaaatggggttggatatgtttggtattctagtccagagatgtgcc
cagttgttagcggtgcacaccaagtctagtgactaccctggccggatgttcagtcgagaa
ctggaagaactgattcctggcatcaaggtttggactaattggatgatttgccatgcagat
ctatggaacccccctccacaagtcagggatccagcccttgggcctgatatagatgtctgg
gtgtgtacatcaaccttgtgcaatatattgaaagagatggacacatctataatcaagttt
tatacagaaaaaagtgaaggactggaagcagtgattttatcagaggatataatgatgtct
ggatttgtgccactgttaacaacacccctcaccagcacgtttgtggaggacactgttgac
aaggacatggccagagattgtctgcgagtagagaagttgcgtgtgtttggagagtaccta
tgtggagtggagcctccaatgttagcatacagtgctgagacaaagaagtattacagtgtg
gcgccatctgatggctacgagaatgacgagcctcgaggggacgatcaagatgaggctgaa
ttgtcagaggaagaagatgttgttatagaggatgaagagattatacatatggaggaggca
ggtgatcagcatgtacaacatctaaaggcaaggaaagaagagctggaaaagagaatggaa
gaaaagaaaagattacatgaacatagaaagaaagtgatagagacaaatcgtcacagctgt
atagagatagaaattcgtccaatattcctcattcctgatacaaattgcttcattgaccat
ctacctagtatcaacaaactcatctcagacagacagtacaccatagttatacctcttgtt
gtcatcaacgaactagacggcctagctcagggtcagaggatgaaaggccagtatgataat
gaagatcatgcgaacaaagttaaacatcgtgctgctaacactatagaaatgctggagaaa
gaatttgaaaagaaaaattcccacctgaaagcgctaacttcaaaaggcactgtcatggaa
accatatcattccgtagtgaggaaactgattctagtggaaacaatgatgatctcatatta
tcctgctgtacctattactgtaaagatatagccagggattacatgcccaaagataaagat
gctccagtacgccttcacagggaagttgtgttgctcaccgaggaccgcaacctgcgactg
aaagctcacacgcataatgtgcccgtaaaagatttaccagcctttatgaagtggagctcc
gccacatga
DBGET
integrated database retrieval system
