Ruditapes philippinarum (Manila clam): 132719355
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Entry
132719355 CDS
T09557
Name
(RefSeq) uncharacterized protein LOC132719355
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
rphi
Ruditapes philippinarum (Manila clam)
Pathway
rphi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
132719355
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rphi03019
]
132719355
03400 DNA repair and recombination proteins [BR:
rphi03400
]
132719355
Enzymes [BR:
rphi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
132719355
Messenger RNA biogenesis [BR:
rphi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
132719355
DNA repair and recombination proteins [BR:
rphi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
132719355
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
Cas3-like_C_2
DUF2368
Motif
Other DBs
NCBI-GeneID:
132719355
NCBI-ProteinID:
XP_060559100
LinkDB
All DBs
Position
Unknown
AA seq
493 aa
AA seq
DB search
MMDAETVIKLFNERKSKYNIPYDLKKEQADVAVSIANKRNCVAFLPTGYGKTLCFMVNAI
IHDIPCLTLVVSPLLSLMDSQIKSLKACNFTCIKIGSDLTAEESDGMIFGLNYFIKNRIY
TYLLCCKQIIKLMIFTGISTGEYSFVFSSPESVLKQKWRDIFLNDIWQSRIALIVFDEAH
CISEWGEEFRPEYQEMSQLRSFFKAPVLSLTATCTPKIKEEIMTSLQLDECNTDIICKSA
NRENIFIICRKKLTREYEVELDWLVNHLKERGKNSKKSIVYCRSIDTVSEVFITVKRLLG
DQAYSDGIKCSQNLLVEMYHKCTHETSKNRILTDFSSNLSTIRCLFATVALGMGIDIPDV
DIVVHIGCPKSVISYWQEAGRCARDGRQGLSYIMYDNFTASLKNTDKSMASMVRSSETDC
IRKQVLSTFSISEAHSYISTVCEGCDFKYCNCQACRCCEICAQRCPCSKRSILDLDTFLS
NVDFNARLTSEKN
NT seq
1482 nt
NT seq
+upstream
nt +downstream
nt
atgatggatgctgaaacagtaatcaaactttttaatgaacgtaaatcaaagtataacata
ccatatgatctgaagaaagaacaagcagatgtggcggtttccattgctaataaaagaaac
tgcgtggcttttttgccaactggatatggaaagacattatgctttatggtgaacgcaata
atacatgatataccatgtttaacactggttgtttctccgttactgtccttaatggatagt
caaattaaaagtttgaaggcatgtaactttacatgcataaagattggatctgatcttact
gcagaggaatcagacggtatgattttcggattaaattactttataaagaaccgtatatat
acatatttattatgttgtaaacagataattaaattaatgatttttacagggatttcgaca
ggcgagtacagcttcgtatttagttcacctgagtcagtgttaaaacaaaaatggcgagat
attttccttaatgatatttggcagagcaggattgcacttattgtctttgacgaagcccat
tgcatatcggaatggggagaagaatttaggcctgaatatcaagagatgtcacagttgcgc
agttttttcaaagcaccagttctgtctctaactgcaacttgtaccccaaagataaaggaa
gaaataatgacttccctacagttagatgagtgtaatactgatatcatatgtaaatcagca
aacagggaaaacatattcatcatatgtagaaagaaattgacaagagaatatgaggtcgag
ttagactggctagtaaaccatttaaaggaaaggggcaagaattcaaaaaaaagtattgtt
tattgtcgttcaattgacacggtatcagaggtatttattaccgtgaaacgcttgttagga
gaccaggcatatagtgatggcattaagtgttctcaaaacttattagtagagatgtaccac
aagtgcactcatgaaacgtcaaaaaatagaattttaactgatttctcttcaaatttaagc
actattagatgtttgtttgccacagtcgctcttggaatgggtatagatattccagatgtg
gacatagtagtccatatcggatgtcctaaatcagttatttcctactggcaagaagctggc
agatgtgcacgagatggtcgacaaggtttaagttacataatgtacgataactttacagca
tctttgaagaacactgataaatctatggcttctatggtcagaagtagtgaaacggactgc
attcgaaaacaagtgctttcaacgttttccatttcagaagcacacagctatataagcact
gtatgtgaaggatgtgattttaagtattgtaactgccaggcttgtaggtgctgtgaaatt
tgtgcccagcgatgtccttgttctaaaagatctattctcgatttggatacttttttatca
aatgtcgattttaatgcacggttgacttccgaaaaaaattga
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