Ruditapes philippinarum (Manila clam): 132721086
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Entry
132721086 CDS
T09557
Name
(RefSeq) CCR4-NOT transcription complex subunit 10-like
KO
K12607
CCR4-NOT transcription complex subunit 10
Organism
rphi
Ruditapes philippinarum (Manila clam)
Pathway
rphi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
132721086
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rphi03019
]
132721086
Messenger RNA biogenesis [BR:
rphi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
132721086
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_8
SRP_TPR_like
Motif
Other DBs
NCBI-GeneID:
132721086
NCBI-ProteinID:
XP_060561318
LinkDB
All DBs
Position
Unknown
AA seq
584 aa
AA seq
DB search
YVSDESLCKKVLLLQVELYLCTYQPEKAMGLLTYIEKNVFNGKNMSAEKESSSSKEDSKE
GSPTSESSWETWKPILSVFKTRCFIMMKSMKSVKREIKVLMNVQSSNTSVVFLKANFEYL
RGNYRKAMKMLGSGPQMYTDKGECLTVMHYNNLGCIHFHLRKHNLGAFYFRKAIQENENV
VREMRRSTDQQNRQHGGTKSLSGRPLHCLGMSRHFELMYNMGIQLLHCGKALPAFECLIE
AVQIYQINPHLWLRLAECCIMAYRENNEDDRKLQKRQEVIQGSVGSGVHRKLILGPGVNQ
DKNSVGTPAIPAATLEFASLCLRNALLLLPEVTAETTAAEQNEDKEDGKLGTEPILVQAP
PGNPMRTQEVHNLRCSVLCASSYVALCLNDYTMALQYAETLLKQPKLSGAQSYLAHMYMG
EALVALDRIADGIQHLNPELVTDISTTLPDTKTEQDKTDKLDKGDKDLETPEIKGAFYPW
TPRDPRTAKAIIQYNLAAAHAVRGEYDKAGANLGESSKFIGAPLPAQMYFLKLYLDLIEG
RRKVAQFVIKEHFGHVTPNRFDYKMEMKMASKPGSNNNSSWTTE
NT seq
1755 nt
NT seq
+upstream
nt +downstream
nt
tatgtttcagatgagtccctctgtaaaaaagtgctacttcttcaagttgagttgtatctc
tgtacatatcagcctgaaaaagccatgggtttgttaacatatattgaaaaaaatgtgttc
aacggtaaaaatatgtctgccgaaaaggaaagttcaagtagcaaagaagacagtaaggaa
ggttcgcccactagtgagtcatcctgggagacctggaaacctatacttagtgtgtttaag
accagatgttttatcatgatgaagtccatgaaatcagtgaaaagagaaatcaaagtgtta
atgaatgttcaatcttcaaatacatcagtagtgttcttaaaagcaaattttgagtatttg
agaggaaactacaggaaagcaatgaaaatgttgggatctggtccacaaatgtatacagat
aaaggagaatgtctgacggtgatgcattataataatttaggatgtatacattttcacctg
cgtaaacacaacctaggtgcgttttatttccgcaaggcgattcaggaaaacgagaatgtt
gtacgagaaatgaggcgaagtaccgatcaacagaatagacaacatggaggtaccaagtcg
ttgtctggacgaccattgcactgtctaggaatgagccgccattttgaactcatgtacaat
atgggtattcagctgttgcattgtgggaaggccctgccagcatttgaatgtttgatagag
gcggtacaaatttatcagatcaacccacatttgtggctccgccttgccgagtgttgtatc
atggcgtatagagagaacaatgaagatgatagaaagttacagaaaagacaggaggttata
cagggatctgttggaagtggtgtacatagaaagcttatccttggacccggggtcaaccag
gataaaaacagtgttggtacaccagctataccggcagctactctagagtttgcctcgctg
tgtttgaggaacgcgttactgttgctaccagaggtgactgctgaaacaacggctgcagaa
caaaatgaagataaagaagatggaaaacttggcactgagccaattttagtacaagcacca
cctggaaaccctatgaggacacaagaggtacacaatctcagatgttccgtgctatgtgct
agttcctatgttgccctatgtttgaacgattatacaatggcgctgcaatatgctgaaacc
cttcttaaacaaccaaagttatctggtgctcaaagttacctggcccacatgtatatggga
gaggccctggtagcattagatcgtatagctgatggtatacaacatctcaacccggaacta
gtcactgatatatcaactacactgccagatactaaaacagaacaagacaaaacagacaaa
ctagataaaggtgacaaagatctggaaacaccagaaattaaaggggcattctatccatgg
acacctagagatccacgcacagccaaagcaataatacagtataacttggcggcagcacat
gcagtaaggggagagtatgacaaagctggtgctaatctaggggagagttccaagtttata
ggagcacctttgccagcccagatgtatttccttaaactctacctagatctgatagaaggg
agaaggaaggtggctcaatttgttattaaagaacattttggtcatgtgaccccgaataga
tttgattataaaatggaaatgaaaatggcttccaaaccaggaagtaataataacagttct
tggaccacagagtaa
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